JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GYPE_chr4_143865864_143910559	1/0	t0002	1451	61	1	23	16	8	12	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	t0003	1451	56	2	7	36	3	8	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	t0004	1451	45	14	4	27	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	t0005	1451	5	1	3	0	0	1	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	t0006	1451	5	0	0	5	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	t0007	1451	5	5	0	0	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	t0008	1451	4	3	1	0	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	t0009	1451	2	0	0	2	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	t0010	1451	1	1	0	0	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	t0011	1451	1	0	0	1	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	t0012	1451	1	0	0	1	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	t0013	1451	1	1	0	0	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	t0014	1451	1	1	0	0	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYS1_chr19_48963130_48998309	1/1	t0001	1356	318	66	63	131	12	44	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0002	1356	22	10	3	5	2	2	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0003	1356	10	0	0	10	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0004	1356	9	2	5	2	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0005	1356	7	1	1	4	0	1	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0006	1356	6	5	1	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0007	1356	4	4	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0008	1356	2	2	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0009	1356	2	0	0	0	0	2	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0010	1356	1	0	0	1	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0011	1356	1	0	0	1	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0012	1356	1	0	0	1	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0013	1356	1	0	0	0	0	1	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0014	1356	1	1	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0015	1356	1	1	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0016	1356	1	1	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0017	1356	1	1	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0018	1356	1	0	1	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	t0019	1356	1	0	0	1	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS2_chr12_21531107_21609847	1/0	t0001	1103	136	66	21	26	7	15	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/1	t0002	1103	94	4	20	44	7	18	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	t0003	1103	55	3	11	36	2	3	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	t0004	1104	14	12	0	2	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	t0005	1103	5	0	1	4	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	t0006	1104	2	2	0	0	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	t0007	1103	2	0	0	2	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	t0008	1103	1	1	0	0	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	t0009	1103	1	0	1	0	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	t0010	1103	1	0	0	1	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	t0011	1103	1	0	0	1	0	0	copy fasta	GYS2	chr12	21531107	21609847
GZF1_chr20_23357182_23378062	0/0	t0001	2699	93	3	13	63	5	9	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	1/0	t0002	2699	86	5	26	31	6	17	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0003	2699	64	0	8	53	0	3	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0004	2699	54	30	4	19	0	1	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0005	2699	42	22	11	2	5	2	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0006	2699	35	16	3	13	0	3	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0007	2699	33	5	1	23	0	4	copy fasta	GZF1	chr20	23357182	23378062