JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GZF1_chr20_23357182_23378062	0/0	t0008	2699	5	4	1	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0009	2699	3	2	1	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0010	2699	2	0	0	0	0	2	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0011	2699	1	0	1	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0012	2699	1	0	0	1	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0013	2699	1	1	0	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0014	2699	1	0	0	1	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0015	2699	1	1	0	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0016	2699	1	1	0	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0017	2699	1	0	0	1	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/1	t0018	2699	1	0	0	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0019	2699	1	0	1	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0020	2699	1	0	0	1	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	t0021	2699	1	0	0	0	0	1	copy fasta	GZF1	chr20	23357182	23378062
GZMA_chr5_55097646_55115252	1/1	t0001	108	387	87	60	184	14	40	copy fasta	GZMA	chr5	55097646	55115252
GZMA_chr5_55097646_55115252	0/0	t0002	108	3	3	0	0	0	0	copy fasta	GZMA	chr5	55097646	55115252
GZMB_chr14_24625954_24639190	1/0	t0001	148	338	72	51	168	10	36	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/1	t0002	148	110	26	17	48	6	12	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	t0003	148	2	0	0	0	2	0	copy fasta	GZMB	chr14	24625954	24639190
GZMH_chr14_24601480_24614685	1/1	t0001	196	388	81	79	167	16	43	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	t0002	196	31	6	3	17	2	3	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	t0003	196	2	2	0	0	0	0	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	t0004	196	1	1	0	0	0	0	copy fasta	GZMH	chr14	24601480	24614685
GZMK_chr5_55019256_55039570	1/0	t0001	712	271	38	41	152	8	31	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0002	712	85	17	17	47	0	4	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0003	712	38	14	4	15	3	2	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0004	712	24	12	2	8	0	2	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/1	t0005	712	19	0	9	0	4	5	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0006	712	5	5	0	0	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0007	712	4	0	3	0	1	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0008	712	3	0	2	0	1	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0009	712	3	3	0	0	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0010	712	2	1	0	0	1	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0011	712	2	2	0	0	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0012	712	1	1	0	0	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0013	712	1	0	1	0	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0014	712	1	1	0	0	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0015	712	1	1	0	0	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0016	712	1	0	1	0	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0017	712	1	0	0	1	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0018	712	1	1	0	0	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	t0019	712	1	0	0	1	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMM_chr19_539053_554922	1/1	t0001	151	378	87	70	167	15	37	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	t0002	151	14	1	3	9	0	1	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	t0003	151	5	2	1	0	0	2	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	t0004	151	1	0	0	0	1	0	copy fasta	GZMM	chr19	539053	554922
H1-0_chr22_37800229_37812432	0/1	t0001	1607	154	46	30	60	7	10	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0002	1612	63	3	12	36	3	9	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0003	1611	45	3	13	22	2	5	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0004	1608	22	9	4	0	2	7	copy fasta	H1-0	chr22	37800229	37812432