Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABHD11_chr7_73731094_73743802	0/0	t0001	498	213	75	34	77	7	20	copy fasta	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	1/1	t0002	498	169	16	34	96	7	14	copy fasta	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	0/0	t0003	498	39	3	10	18	4	4	copy fasta	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	0/0	t0004	498	5	0	2	1	0	2	copy fasta	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	0/0	t0005	498	1	1	0	0	0	0	copy fasta	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	0/0	t0006	498	1	1	0	0	0	0	copy fasta	ABHD11	chr7	73731094	73743802
ABHD12B_chr14_50867053_50909970	0/1	t0001	727	195	45	41	72	10	26	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	t0002	727	113	6	20	76	3	8	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	1/0	t0003	727	21	14	2	1	1	2	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	t0004	727	19	4	4	10	0	1	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	t0005	727	10	10	0	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	t0006	727	5	5	0	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	t0007	727	3	0	0	3	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	t0008	727	2	0	0	0	0	2	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	t0009	727	1	1	0	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	t0010	727	1	1	0	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	t0011	727	1	0	1	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	t0012	727	1	0	0	0	0	1	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	t0013	727	1	1	0	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	t0014	727	1	0	0	1	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	t0015	727	1	1	0	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	t0016	727	1	0	0	1	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12_chr20_25295214_25395835	0/1	t0001	764	131	9	27	75	4	15	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	t0002	773	95	31	25	24	5	10	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	t0003	771	30	8	12	0	1	9	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	t0004	773	19	14	2	0	0	3	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	t0005	764	9	8	1	0	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	t0006	773	8	8	0	0	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	t0007	773	6	0	4	0	1	1	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	t0008	764	5	5	0	0	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	t0009	773	5	5	0	0	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	t0010	773	4	2	1	0	1	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	t0011	773	2	2	0	0	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	t0012	764	1	0	0	1	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	1/0	t0013	764	1	0	0	0	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD13_chr13_108213392_108239243	1/0	t0001	4300	212	56	29	91	9	26	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0002	4300	34	0	12	21	0	1	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0003	4299	30	3	4	21	1	1	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0004	4302	23	1	5	14	1	2	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0005	4300	20	1	5	14	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0006	4303	14	1	12	0	1	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0007	4299	12	11	1	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0008	4299	5	4	1	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0009	4300	5	0	0	1	1	3	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0010	4302	3	0	2	0	1	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0011	4300	2	1	0	0	1	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0012	4300	2	0	0	0	2	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0013	4300	2	2	0	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0014	4302	2	2	0	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0015	4306	2	2	0	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243