Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMZ1_chr7_2683202_2724683	0/0	t0031	7120	2	0	1	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0032	7119	2	0	0	2	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0033	7119	2	0	0	2	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0034	7119	2	0	0	0	2	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0035	7120	2	2	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0036	7139	2	0	0	0	0	2	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0037	7121	2	2	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0038	7121	2	0	1	0	1	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0039	7120	2	1	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0040	7122	2	1	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0041	7108	2	2	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0042	7123	2	0	0	2	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0043	7113	2	2	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0044	7119	2	0	2	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0045	7120	2	0	0	2	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0046	7119	2	0	0	0	1	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0047	7119	2	2	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0048	7123	2	0	1	0	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0049	7119	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0050	7119	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0051	7119	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0052	7112	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0053	7114	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0054	7119	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0055	7114	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0056	7113	1	0	0	0	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0057	7114	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0058	7114	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0059	7122	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0060	7114	1	0	0	0	1	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0061	7119	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0062	7119	1	0	0	0	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0063	7119	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0064	7119	1	0	0	0	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0065	7119	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0066	7119	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0067	7119	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0068	7119	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0069	7118	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0070	7119	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0071	7119	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0072	7118	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0073	7119	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0074	7119	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0075	7120	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0076	7119	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0077	7119	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0078	7119	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0079	7119	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0080	7119	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683