JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
H1-0_chr22_37800229_37812432	0/0	t0005	1608	21	7	3	8	0	3	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0006	1608	18	5	3	9	0	1	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0007	1612	5	0	0	5	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0008	1609	4	4	0	0	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0009	1608	4	4	0	0	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0010	1619	3	3	0	0	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0011	1611	2	0	0	2	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0012	1613	2	0	1	1	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	1/0	t0013	1620	2	0	0	0	0	1	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0014	1592	1	0	0	1	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0015	1608	1	0	0	1	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0016	1608	1	0	0	1	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0017	1608	1	0	1	0	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0018	1612	1	0	1	0	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0019	1609	1	1	0	0	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0020	1610	1	0	1	0	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0021	1608	1	1	0	0	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0022	1609	1	0	1	0	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0023	1609	1	1	0	0	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0024	1619	1	0	0	1	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0025	1615	1	0	0	1	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0026	1613	1	0	0	1	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0027	1614	1	1	0	0	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	t0028	1618	1	0	0	1	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-10_chr3_129309771_129321286	1/0	t0001	875	262	28	50	153	7	23	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	t0002	875	35	25	10	0	0	0	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	t0003	875	33	22	6	1	1	3	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	t0004	875	28	3	0	22	0	3	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/1	t0005	875	18	1	8	0	2	6	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	t0006	875	6	6	0	0	0	0	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	t0007	875	4	4	0	0	0	0	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	t0008	875	3	0	1	0	1	1	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	t0009	875	2	0	2	0	0	0	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	t0010	875	2	1	1	0	0	0	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	t0011	875	1	0	1	0	0	0	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	t0012	875	1	0	0	0	0	1	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	t0013	875	1	1	0	0	0	0	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	t0014	875	1	0	0	0	0	1	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	t0015	875	1	0	0	0	1	0	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	t0016	875	1	0	1	0	0	0	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	t0017	875	1	1	0	0	0	0	copy fasta	H1-10	chr3	129309771	129321286
H1-1_chr6_26012032_26022787	1/1	t0001	109	396	98	70	160	18	48	copy fasta	H1-1	chr6	26012032	26022787
H1-2_chr6_26050740_26061470	1/1	t0001	90	421	90	70	197	16	46	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	t0002	90	1	0	0	1	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-3_chr6_26229212_26239987	1/0	t0001	111	305	88	67	100	13	36	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/1	t0002	111	22	5	5	4	1	6	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	t0003	111	12	0	0	12	0	0	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	t0004	111	1	1	0	0	0	0	copy fasta	H1-3	chr6	26229212	26239987
H1-4_chr6_26151329_26162115	1/1	t0001	128	377	96	72	151	12	44	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	t0002	128	6	0	0	6	0	0	copy fasta	H1-4	chr6	26151329	26162115