JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
H1-4_chr6_26151329_26162115	0/0	t0003	128	2	0	2	0	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	t0004	128	1	0	0	1	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	t0005	128	1	0	0	1	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	t0006	128	1	0	0	1	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-5_chr6_27861792_27872588	1/1	t0001	117	388	90	74	176	8	38	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	t0002	117	2	0	0	0	0	2	copy fasta	H1-5	chr6	27861792	27872588
H1-6_chr6_26102412_26113135	1/1	t0001	101	407	100	81	164	14	46	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	t0002	101	1	0	1	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-7_chr12_48323980_48335279	1/1	t0001	533	415	97	78	184	14	40	copy fasta	H1-7	chr12	48323980	48335279
H1-7_chr12_48323980_48335279	0/0	t0002	533	5	0	4	0	0	1	copy fasta	H1-7	chr12	48323980	48335279
H1-7_chr12_48323980_48335279	0/0	t0003	533	3	1	2	0	0	0	copy fasta	H1-7	chr12	48323980	48335279
H1-7_chr12_48323980_48335279	0/0	t0004	533	1	0	0	0	0	1	copy fasta	H1-7	chr12	48323980	48335279
H1-8_chr3_129538175_129556467	1/1	t0001	172	410	89	72	185	18	44	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	t0002	172	5	5	0	0	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	t0003	172	4	0	0	4	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	t0004	172	2	2	0	0	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	t0005	172	1	0	0	1	0	0	copy fasta	H1-8	chr3	129538175	129556467
H2AB1_chrX_154879972_154890558	0/0	t0001	240	315	78	58	138	11	30	copy fasta	H2AB1	chrX	154879972	154890558
H2AB1_chrX_154879972_154890558	0/0	t0002	240	2	0	0	2	0	0	copy fasta	H2AB1	chrX	154879972	154890558
H2AB1_chrX_154879972_154890558	0/0	t0003	242	1	0	0	1	0	0	copy fasta	H2AB1	chrX	154879972	154890558
H2AB2_chrX_155375709_155386299	0/0	t0001	244	226	69	48	75	9	25	copy fasta	H2AB2	chrX	155375709	155386299
H2AB2_chrX_155375709_155386299	0/0	t0002	244	1	0	0	1	0	0	copy fasta	H2AB2	chrX	155375709	155386299
H2AB2_chrX_155375709_155386299	0/0	t0003	245	1	0	0	1	0	0	copy fasta	H2AB2	chrX	155375709	155386299
H2AB2_chrX_155375709_155386299	0/0	t0004	246	1	0	0	1	0	0	copy fasta	H2AB2	chrX	155375709	155386299
H2AB3_chrX_155454415_155465005	0/0	t0001	244	210	52	40	88	7	23	copy fasta	H2AB3	chrX	155454415	155465005
H2AB3_chrX_155454415_155465005	0/0	t0002	244	4	3	1	0	0	0	copy fasta	H2AB3	chrX	155454415	155465005
H2AC11_chr6_27128043_27138535	1/1	t0001	101	400	92	77	176	18	35	copy fasta	H2AC11	chr6	27128043	27138535
H2AC11_chr6_27128043_27138535	0/0	t0002	105	3	2	1	0	0	0	copy fasta	H2AC11	chr6	27128043	27138535
H2AC11_chr6_27128043_27138535	0/0	t0003	101	2	0	0	2	0	0	copy fasta	H2AC11	chr6	27128043	27138535
H2AC11_chr6_27128043_27138535	0/0	t0004	101	1	0	0	0	0	1	copy fasta	H2AC11	chr6	27128043	27138535
H2AC12_chr6_27142106_27152562	1/1	t0001	71	377	98	60	166	16	35	copy fasta	H2AC12	chr6	27142106	27152562
H2AC12_chr6_27142106_27152562	0/0	t0002	72	5	0	2	0	0	3	copy fasta	H2AC12	chr6	27142106	27152562
H2AC13_chr6_27803173_27813667	0/0	t0001	103	400	85	70	194	10	41	copy fasta	H2AC13	chr6	27803173	27813667
H2AC13_chr6_27803173_27813667	0/0	t0002	103	3	3	0	0	0	0	copy fasta	H2AC13	chr6	27803173	27813667
H2AC13_chr6_27803173_27813667	0/0	t0003	103	3	3	0	0	0	0	copy fasta	H2AC13	chr6	27803173	27813667
H2AC13_chr6_27803173_27813667	0/0	t0004	103	1	1	0	0	0	0	copy fasta	H2AC13	chr6	27803173	27813667
H2AC13_chr6_27803173_27813667	0/0	t0005	103	1	0	0	0	0	1	copy fasta	H2AC13	chr6	27803173	27813667
H2AC14_chr6_27809302_27819777	0/0	t0001	90	315	66	49	157	9	34	copy fasta	H2AC14	chr6	27809302	27819777
H2AC14_chr6_27809302_27819777	0/0	t0002	90	56	18	16	17	1	4	copy fasta	H2AC14	chr6	27809302	27819777
H2AC14_chr6_27809302_27819777	0/0	t0003	90	8	7	1	0	0	0	copy fasta	H2AC14	chr6	27809302	27819777
H2AC14_chr6_27809302_27819777	0/0	t0004	90	4	0	2	0	0	2	copy fasta	H2AC14	chr6	27809302	27819777
H2AC14_chr6_27809302_27819777	0/0	t0005	90	1	1	0	0	0	0	copy fasta	H2AC14	chr6	27809302	27819777
H2AC15_chr6_27832880_27843375	1/1	t0001	104	408	98	68	190	14	36	copy fasta	H2AC15	chr6	27832880	27843375
H2AC16_chr6_27860317_27870798	1/1	t0001	90	374	90	74	166	8	34	copy fasta	H2AC16	chr6	27860317	27870798
H2AC17_chr6_27887699_27898185	1/1	t0001	95	397	88	69	176	16	46	copy fasta	H2AC17	chr6	27887699	27898185
H2AC17_chr6_27887699_27898185	0/0	t0002	95	9	8	1	0	0	0	copy fasta	H2AC17	chr6	27887699	27898185
H2AC17_chr6_27887699_27898185	0/0	t0003	95	1	1	0	0	0	0	copy fasta	H2AC17	chr6	27887699	27898185
H2AC17_chr6_27887699_27898185	0/0	t0004	95	1	1	0	0	0	0	copy fasta	H2AC17	chr6	27887699	27898185
H2AC18_chr1_149837218_149847750	0/0	t0001	141	279	50	66	107	13	43	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	t0002	141	27	21	2	1	1	2	copy fasta	H2AC18	chr1	149837218	149847750