JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
H2AC18_chr1_149837218_149847750	0/0	t0003	141	7	7	0	0	0	0	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	t0004	141	2	0	0	2	0	0	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	t0005	141	1	1	0	0	0	0	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	t0006	141	1	0	0	1	0	0	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	t0007	141	1	0	0	1	0	0	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	t0008	141	1	0	0	0	0	1	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	t0009	141	1	1	0	0	0	0	copy fasta	H2AC18	chr1	149837218	149847750
H2AC19_chr1_149846061_149856594	0/0	t0001	142	289	50	56	132	11	40	copy fasta	H2AC19	chr1	149846061	149856594
H2AC19_chr1_149846061_149856594	0/0	t0002	142	28	22	2	1	1	2	copy fasta	H2AC19	chr1	149846061	149856594
H2AC19_chr1_149846061_149856594	0/0	t0003	142	7	7	0	0	0	0	copy fasta	H2AC19	chr1	149846061	149856594
H2AC19_chr1_149846061_149856594	0/0	t0004	142	3	0	0	3	0	0	copy fasta	H2AC19	chr1	149846061	149856594
H2AC19_chr1_149846061_149856594	0/0	t0005	142	1	1	0	0	0	0	copy fasta	H2AC19	chr1	149846061	149856594
H2AC1_chr6_25721063_25731562	0/1	t0001	105	211	64	36	66	12	32	copy fasta	H2AC1	chr6	25721063	25731562
H2AC1_chr6_25721063_25731562	0/0	t0002	107	174	9	32	117	6	10	copy fasta	H2AC1	chr6	25721063	25731562
H2AC1_chr6_25721063_25731562	1/0	t0003	105	22	14	0	1	0	6	copy fasta	H2AC1	chr6	25721063	25731562
H2AC1_chr6_25721063_25731562	0/0	t0004	107	3	0	0	3	0	0	copy fasta	H2AC1	chr6	25721063	25731562
H2AC1_chr6_25721063_25731562	0/0	t0005	105	2	1	1	0	0	0	copy fasta	H2AC1	chr6	25721063	25731562
H2AC1_chr6_25721063_25731562	0/0	t0006	107	1	0	0	1	0	0	copy fasta	H2AC1	chr6	25721063	25731562
H2AC1_chr6_25721063_25731562	0/0	t0007	107	1	0	1	0	0	0	copy fasta	H2AC1	chr6	25721063	25731562
H2AC20_chr1_149881918_149892411	1/1	t0001	105	367	94	67	156	10	38	copy fasta	H2AC20	chr1	149881918	149892411
H2AC20_chr1_149881918_149892411	0/0	t0002	105	1	0	1	0	0	0	copy fasta	H2AC20	chr1	149881918	149892411
H2AC21_chr1_149882469_149892965	1/1	t0001	105	361	94	70	149	10	36	copy fasta	H2AC21	chr1	149882469	149892965
H2AC21_chr1_149882469_149892965	0/0	t0002	105	1	0	0	1	0	0	copy fasta	H2AC21	chr1	149882469	149892965
H2AC25_chr1_228452364_228462873	1/1	t0001	118	416	70	77	216	16	35	copy fasta	H2AC25	chr1	228452364	228462873
H2AC25_chr1_228452364_228462873	0/0	t0002	118	18	18	0	0	0	0	copy fasta	H2AC25	chr1	228452364	228462873
H2AC25_chr1_228452364_228462873	0/0	t0003	118	3	0	0	0	0	3	copy fasta	H2AC25	chr1	228452364	228462873
H2AC25_chr1_228452364_228462873	0/0	t0004	118	2	1	1	0	0	0	copy fasta	H2AC25	chr1	228452364	228462873
H2AC25_chr1_228452364_228462873	0/0	t0005	118	1	1	0	0	0	0	copy fasta	H2AC25	chr1	228452364	228462873
H2AC25_chr1_228452364_228462873	0/0	t0006	118	1	0	1	0	0	0	copy fasta	H2AC25	chr1	228452364	228462873
H2AC25_chr1_228452364_228462873	0/0	t0007	118	1	0	1	0	0	0	copy fasta	H2AC25	chr1	228452364	228462873
H2AC4_chr6_26028092_26038618	0/1	t0001	138	198	73	27	63	14	20	copy fasta	H2AC4	chr6	26028092	26038618
H2AC4_chr6_26028092_26038618	0/0	t0002	138	102	3	22	70	0	7	copy fasta	H2AC4	chr6	26028092	26038618
H2AC4_chr6_26028092_26038618	1/0	t0003	135	76	4	23	26	3	19	copy fasta	H2AC4	chr6	26028092	26038618
H2AC4_chr6_26028092_26038618	0/0	t0004	138	15	6	5	2	1	1	copy fasta	H2AC4	chr6	26028092	26038618
H2AC4_chr6_26028092_26038618	0/0	t0005	138	7	7	0	0	0	0	copy fasta	H2AC4	chr6	26028092	26038618
H2AC4_chr6_26028092_26038618	0/0	t0006	138	5	4	1	0	0	0	copy fasta	H2AC4	chr6	26028092	26038618
H2AC4_chr6_26028092_26038618	0/0	t0007	138	1	0	0	1	0	0	copy fasta	H2AC4	chr6	26028092	26038618
H2AC4_chr6_26028092_26038618	0/0	t0008	138	1	0	0	0	0	1	copy fasta	H2AC4	chr6	26028092	26038618
H2AC4_chr6_26028092_26038618	0/0	t0009	138	1	1	0	0	0	0	copy fasta	H2AC4	chr6	26028092	26038618
H2AC6_chr6_26119172_26129690	1/1	t0001	127	271	70	47	116	8	28	copy fasta	H2AC6	chr6	26119172	26129690
H2AC6_chr6_26119172_26129690	0/0	t0002	127	124	26	29	41	6	22	copy fasta	H2AC6	chr6	26119172	26129690
H2AC6_chr6_26119172_26129690	0/0	t0003	127	1	0	0	1	0	0	copy fasta	H2AC6	chr6	26119172	26129690
H2AC7_chr6_26193784_26204293	1/0	t0001	118	378	87	70	166	16	38	copy fasta	H2AC7	chr6	26193784	26204293
H2AC7_chr6_26193784_26204293	0/1	t0002	118	20	5	4	5	1	4	copy fasta	H2AC7	chr6	26193784	26204293
H2AC7_chr6_26193784_26204293	0/0	t0003	118	3	0	0	3	0	0	copy fasta	H2AC7	chr6	26193784	26204293
H2AC7_chr6_26193784_26204293	0/0	t0004	118	1	0	0	0	1	0	copy fasta	H2AC7	chr6	26193784	26204293
H2AC8_chr6_26211921_26222437	1/1	t0001	125	362	94	66	146	14	40	copy fasta	H2AC8	chr6	26211921	26222437
H2AJ_chr12_14769405_14780024	1/1	t0001	231	384	75	76	180	15	36	copy fasta	H2AJ	chr12	14769405	14780024
H2AJ_chr12_14769405_14780024	0/0	t0002	231	58	14	7	27	1	9	copy fasta	H2AJ	chr12	14769405	14780024
H2AJ_chr12_14769405_14780024	0/0	t0003	231	4	0	1	0	0	3	copy fasta	H2AJ	chr12	14769405	14780024