JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
H2AJ_chr12_14769405_14780024	0/0	t0004	231	3	0	0	3	0	0	copy fasta	H2AJ	chr12	14769405	14780024
H2AJ_chr12_14769405_14780024	0/0	t0005	231	2	0	0	2	0	0	copy fasta	H2AJ	chr12	14769405	14780024
H2AJ_chr12_14769405_14780024	0/0	t0006	231	1	1	0	0	0	0	copy fasta	H2AJ	chr12	14769405	14780024
H2AL3_chrX_37989272_37999904	1/1	t0001	187	330	78	60	147	11	32	copy fasta	H2AL3	chrX	37989272	37999904
H2AL3_chrX_37989272_37999904	0/0	t0002	187	1	0	0	1	0	0	copy fasta	H2AL3	chrX	37989272	37999904
H2AP_chrX_37985779_37996314	1/1	t0001	183	340	77	62	154	13	32	copy fasta	H2AP	chrX	37985779	37996314
H2AX_chr11_119088874_119100465	1/1	t0001	1161	258	70	49	89	13	35	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0002	1161	118	10	21	77	2	8	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0003	1161	12	0	1	11	0	0	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0004	1161	6	6	0	0	0	0	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0005	1162	6	1	0	4	0	1	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0006	1161	6	5	1	0	0	0	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0007	1161	4	0	1	3	0	0	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0008	1161	4	1	2	0	1	0	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0009	1161	4	0	0	4	0	0	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0010	1162	4	0	0	4	0	0	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0011	1161	2	0	0	0	1	1	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0012	1161	1	1	0	0	0	0	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0013	1161	1	0	0	0	0	1	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0014	1161	1	0	1	0	0	0	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0015	1161	1	0	0	1	0	0	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0016	1162	1	0	0	1	0	0	copy fasta	H2AX	chr11	119088874	119100465
H2AX_chr11_119088874_119100465	0/0	t0017	1161	1	0	0	0	1	0	copy fasta	H2AX	chr11	119088874	119100465
H2AZ1_chr4_99943088_99955275	1/1	t0001	480	409	92	76	186	12	41	copy fasta	H2AZ1	chr4	99943088	99955275
H2AZ1_chr4_99943088_99955275	0/0	t0002	480	1	0	0	0	0	1	copy fasta	H2AZ1	chr4	99943088	99955275
H2AZ2_chr7_44826978_44853087	1/0	t0001	2640	110	25	13	67	0	4	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0002	2640	99	12	24	48	7	8	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0003	2640	81	18	12	44	0	7	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0004	2640	48	0	21	4	6	17	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0005	2640	11	10	1	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/1	t0006	2640	9	0	3	2	0	3	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0007	2640	6	6	0	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0008	2640	4	4	0	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0009	2639	3	2	1	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0010	2640	3	1	0	1	1	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0011	2640	3	0	1	1	0	1	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0012	2640	3	0	0	3	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0013	2640	3	1	2	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0014	2640	3	3	0	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0015	2640	3	2	1	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0016	2640	2	0	0	0	0	2	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0017	2640	2	2	0	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0018	2640	2	0	1	0	0	1	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0019	2640	1	1	0	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0020	2640	1	0	0	0	0	1	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0021	2639	1	1	0	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0022	2640	1	1	0	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0023	2640	1	1	0	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0024	2640	1	1	0	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0025	2640	1	0	1	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087