JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
H2AZ2_chr7_44826978_44853087	0/0	t0026	2640	1	1	0	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0027	2640	1	1	0	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0028	2640	1	1	0	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2AZ2_chr7_44826978_44853087	0/0	t0029	2640	1	0	1	0	0	0	copy fasta	H2AZ2	chr7	44826978	44853087
H2BC10_chr6_26267931_26278412	1/1	t0001	102	395	92	80	166	10	45	copy fasta	H2BC10	chr6	26267931	26278412
H2BC10_chr6_26267931_26278412	0/0	t0002	102	1	0	0	0	0	1	copy fasta	H2BC10	chr6	26267931	26278412
H2BC11_chr6_27127316_27137795	1/1	t0001	100	370	86	71	162	13	36	copy fasta	H2BC11	chr6	27127316	27137795
H2BC11_chr6_27127316_27137795	0/0	t0002	100	20	3	4	8	5	0	copy fasta	H2BC11	chr6	27127316	27137795
H2BC11_chr6_27127316_27137795	0/0	t0003	100	2	0	0	2	0	0	copy fasta	H2BC11	chr6	27127316	27137795
H2BC11_chr6_27127316_27137795	0/0	t0004	100	2	2	0	0	0	0	copy fasta	H2BC11	chr6	27127316	27137795
H2BC11_chr6_27127316_27137795	0/0	t0005	100	1	1	0	0	0	0	copy fasta	H2BC11	chr6	27127316	27137795
H2BC11_chr6_27127316_27137795	0/0	t0006	100	1	0	1	0	0	0	copy fasta	H2BC11	chr6	27127316	27137795
H2BC12L_chr21_43560182_43570648	0/1	t0001	87	407	90	75	184	12	45	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	t0002	87	2	0	1	0	0	1	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12_chr6_27141361_27151855	1/1	t0001	115	380	95	63	166	16	38	copy fasta	H2BC12	chr6	27141361	27151855
H2BC12_chr6_27141361_27151855	0/0	t0002	115	3	3	0	0	0	0	copy fasta	H2BC12	chr6	27141361	27151855
H2BC12_chr6_27141361_27151855	0/0	t0003	115	1	0	1	0	0	0	copy fasta	H2BC12	chr6	27141361	27151855
H2BC13_chr6_27802479_27812929	1/1	t0001	71	345	72	52	174	9	36	copy fasta	H2BC13	chr6	27802479	27812929
H2BC13_chr6_27802479_27812929	0/0	t0002	71	67	22	18	20	1	6	copy fasta	H2BC13	chr6	27802479	27812929
H2BC14_chr6_27810022_27820489	1/1	t0001	88	378	90	66	170	10	40	copy fasta	H2BC14	chr6	27810022	27820489
H2BC14_chr6_27810022_27820489	0/0	t0002	80	1	1	0	0	0	0	copy fasta	H2BC14	chr6	27810022	27820489
H2BC14_chr6_27810022_27820489	0/0	t0003	88	1	1	0	0	0	0	copy fasta	H2BC14	chr6	27810022	27820489
H2BC15_chr6_27833569_27844110	1/1	t0001	162	397	89	66	191	14	35	copy fasta	H2BC15	chr6	27833569	27844110
H2BC15_chr6_27833569_27844110	0/0	t0002	162	16	6	2	7	0	1	copy fasta	H2BC15	chr6	27833569	27844110
H2BC15_chr6_27833569_27844110	0/0	t0003	162	1	1	0	0	0	0	copy fasta	H2BC15	chr6	27833569	27844110
H2BC15_chr6_27833569_27844110	0/0	t0004	162	1	1	0	0	0	0	copy fasta	H2BC15	chr6	27833569	27844110
H2BC15_chr6_27833569_27844110	0/0	t0005	162	1	1	0	0	0	0	copy fasta	H2BC15	chr6	27833569	27844110
H2BC17_chr6_27888425_27898891	1/1	t0001	87	410	97	70	179	16	46	copy fasta	H2BC17	chr6	27888425	27898891
H2BC17_chr6_27888425_27898891	0/0	t0002	87	1	0	0	1	0	0	copy fasta	H2BC17	chr6	27888425	27898891
H2BC17_chr6_27888425_27898891	0/0	t0003	87	1	1	0	0	0	0	copy fasta	H2BC17	chr6	27888425	27898891
H2BC18_chr1_149806879_149817370	0/0	t0001	112	353	96	62	143	16	36	copy fasta	H2BC18	chr1	149806879	149817370
H2BC18_chr1_149806879_149817370	0/0	t0002	112	6	0	6	0	0	0	copy fasta	H2BC18	chr1	149806879	149817370
H2BC18_chr1_149806879_149817370	0/0	t0003	112	2	0	0	0	0	2	copy fasta	H2BC18	chr1	149806879	149817370
H2BC18_chr1_149806879_149817370	0/0	t0004	112	2	0	2	0	0	0	copy fasta	H2BC18	chr1	149806879	149817370
H2BC18_chr1_149806879_149817370	0/0	t0005	65	1	0	0	1	0	0	copy fasta	H2BC18	chr1	149806879	149817370
H2BC1_chr6_25721777_25732345	1/0	t0001	186	184	71	28	45	10	29	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	t0002	186	184	10	35	123	6	10	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/1	t0003	186	35	6	7	10	2	9	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	t0004	186	12	0	0	12	0	0	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	t0005	186	1	1	0	0	0	0	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	t0006	186	1	1	0	0	0	0	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	t0007	186	1	1	0	0	0	0	copy fasta	H2BC1	chr6	25721777	25732345
H2BC21_chr1_149879459_149891682	1/1	t0001	1844	340	83	59	150	12	34	copy fasta	H2BC21	chr1	149879459	149891682
H2BC21_chr1_149879459_149891682	0/0	t0002	1844	7	0	7	0	0	0	copy fasta	H2BC21	chr1	149879459	149891682
H2BC21_chr1_149879459_149891682	0/0	t0003	1844	6	6	0	0	0	0	copy fasta	H2BC21	chr1	149879459	149891682
H2BC21_chr1_149879459_149891682	0/0	t0004	1844	3	0	0	3	0	0	copy fasta	H2BC21	chr1	149879459	149891682
H2BC21_chr1_149879459_149891682	0/0	t0005	1844	2	2	0	0	0	0	copy fasta	H2BC21	chr1	149879459	149891682
H2BC21_chr1_149879459_149891682	0/0	t0006	1844	2	0	2	0	0	0	copy fasta	H2BC21	chr1	149879459	149891682
H2BC21_chr1_149879459_149891682	0/0	t0007	1844	1	0	0	1	0	0	copy fasta	H2BC21	chr1	149879459	149891682
H2BC21_chr1_149879459_149891682	0/0	t0008	1844	1	0	0	0	0	1	copy fasta	H2BC21	chr1	149879459	149891682