JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
H2BC21_chr1_149879459_149891682	0/0	t0009	1844	1	1	0	0	0	0	copy fasta	H2BC21	chr1	149879459	149891682
H2BC21_chr1_149879459_149891682	0/0	t0010	1844	1	0	0	0	0	1	copy fasta	H2BC21	chr1	149879459	149891682
H2BC21_chr1_149879459_149891682	0/0	t0011	1844	1	1	0	0	0	0	copy fasta	H2BC21	chr1	149879459	149891682
H2BC21_chr1_149879459_149891682	0/0	t0012	1844	1	1	0	0	0	0	copy fasta	H2BC21	chr1	149879459	149891682
H2BC26_chr1_228453103_228463558	1/1	t0001	76	447	92	84	215	16	38	copy fasta	H2BC26	chr1	228453103	228463558
H2BC26_chr1_228453103_228463558	0/0	t0002	76	1	0	0	1	0	0	copy fasta	H2BC26	chr1	228453103	228463558
H2BC3_chr6_26038227_26048713	1/0	t0001	107	418	95	74	186	16	46	copy fasta	H2BC3	chr6	26038227	26048713
H2BC3_chr6_26038227_26048713	0/0	t0002	107	1	1	0	0	0	0	copy fasta	H2BC3	chr6	26038227	26048713
H2BC4_chr6_26118467_26128926	1/1	t0001	80	402	98	74	162	16	50	copy fasta	H2BC4	chr6	26118467	26128926
H2BC5_chr6_26153122_26163607	1/1	t0001	106	380	96	78	152	12	40	copy fasta	H2BC5	chr6	26153122	26163607
H2BC6_chr6_26178761_26189230	1/1	t0001	90	383	93	64	172	14	38	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	t0002	90	3	0	0	3	0	0	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	t0003	90	1	1	0	0	0	0	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	t0004	90	1	0	0	1	0	0	copy fasta	H2BC6	chr6	26178761	26189230
H2BC7_chr6_26194516_26204988	1/1	t0001	93	399	90	74	174	18	41	copy fasta	H2BC7	chr6	26194516	26204988
H2BC7_chr6_26194516_26204988	0/0	t0002	93	1	0	0	0	0	1	copy fasta	H2BC7	chr6	26194516	26204988
H2BC8_chr6_26211200_26221688	1/1	t0001	109	355	87	65	147	14	40	copy fasta	H2BC8	chr6	26211200	26221688
H2BC8_chr6_26211200_26221688	0/0	t0002	109	8	8	0	0	0	0	copy fasta	H2BC8	chr6	26211200	26221688
H2BC8_chr6_26211200_26221688	0/0	t0003	109	1	0	1	0	0	0	copy fasta	H2BC8	chr6	26211200	26221688
H2BC8_chr6_26211200_26221688	0/0	t0004	109	1	0	0	1	0	0	copy fasta	H2BC8	chr6	26211200	26221688
H2BC8_chr6_26211200_26221688	0/0	t0005	109	1	1	0	0	0	0	copy fasta	H2BC8	chr6	26211200	26221688
H2BC9_chr6_26246614_26257075	1/1	t0001	82	378	98	70	150	14	44	copy fasta	H2BC9	chr6	26246614	26257075
H2BK1_chr7_151202837_151215488	0/0	t0001	203	138	14	17	95	2	10	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	1/0	t0002	205	84	28	21	23	2	9	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	t0003	202	75	25	16	26	2	6	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	t0004	204	41	9	5	10	3	14	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/1	t0005	201	31	2	11	5	5	7	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	t0006	202	21	1	7	13	0	0	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	t0007	202	6	5	1	0	0	0	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	t0008	202	6	5	1	0	0	0	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	t0009	205	3	3	0	0	0	0	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	t0010	205	2	2	0	0	0	0	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	t0011	203	1	1	0	0	0	0	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	t0012	202	1	0	1	0	0	0	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	t0013	202	1	1	0	0	0	0	copy fasta	H2BK1	chr7	151202837	151215488
H2BN1_chr17_32890433_32911586	1/1	t0001	214	425	92	83	186	16	46	copy fasta	H2BN1	chr17	32890433	32911586
H2BN1_chr17_32890433_32911586	0/0	t0002	214	1	0	1	0	0	0	copy fasta	H2BN1	chr17	32890433	32911586
H2BW1_chrX_104006147_104018708	1/1	t0001	472	196	45	37	89	4	19	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	t0002	472	103	5	20	57	9	12	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	t0003	472	11	11	0	0	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	t0004	472	5	5	0	0	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	t0005	472	5	5	0	0	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	t0006	472	4	0	0	4	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	t0007	472	2	2	0	0	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	t0008	472	1	1	0	0	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	t0009	472	1	0	0	1	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	t0010	474	1	0	0	1	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	t0011	472	1	0	0	0	0	1	copy fasta	H2BW1	chrX	104006147	104018708
H2BW2_chrX_104034956_104047454	1/1	t0001	424	328	70	61	153	11	31	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	0/0	t0002	424	1	0	0	1	0	0	copy fasta	H2BW2	chrX	104034956	104047454