JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
H2BW2_chrX_104034956_104047454	0/0	t0003	414	1	0	0	1	0	0	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	0/0	t0004	424	1	1	0	0	0	0	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	0/0	t0005	424	1	1	0	0	0	0	copy fasta	H2BW2	chrX	104034956	104047454
H3-3A_chr1_226057716_226077019	0/0	t0001	659	244	33	51	113	13	34	copy fasta	H3-3A	chr1	226057716	226077019
H3-3A_chr1_226057716_226077019	0/0	t0002	660	161	53	21	71	4	12	copy fasta	H3-3A	chr1	226057716	226077019
H3-3A_chr1_226057716_226077019	0/0	t0003	658	18	4	1	13	0	0	copy fasta	H3-3A	chr1	226057716	226077019
H3-3A_chr1_226057716_226077019	0/0	t0004	660	6	1	3	0	1	1	copy fasta	H3-3A	chr1	226057716	226077019
H3-3A_chr1_226057716_226077019	0/0	t0005	660	2	2	0	0	0	0	copy fasta	H3-3A	chr1	226057716	226077019
H3-3A_chr1_226057716_226077019	0/0	t0006	660	1	0	0	0	0	1	copy fasta	H3-3A	chr1	226057716	226077019
H3-3A_chr1_226057716_226077019	0/0	t0007	659	1	0	0	1	0	0	copy fasta	H3-3A	chr1	226057716	226077019
H3-3A_chr1_226057716_226077019	0/0	t0008	660	1	1	0	0	0	0	copy fasta	H3-3A	chr1	226057716	226077019
H3-3B_chr17_75771434_75784779	0/0	t0001	2295	113	3	25	75	4	6	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0002	2291	65	2	2	57	0	4	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0003	2295	63	31	12	10	3	7	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0004	2295	55	14	19	14	2	6	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/1	t0005	2295	40	0	5	27	3	4	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0006	2293	15	15	0	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0007	2296	10	2	0	1	3	4	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0008	2295	9	4	2	2	0	1	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0009	2292	7	6	1	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0010	2289	7	0	0	7	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0011	2296	4	4	0	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0012	2291	4	4	0	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0013	2295	3	3	0	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0014	2294	3	0	2	1	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0015	2295	2	0	0	2	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0016	2295	2	0	0	0	0	2	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0017	2292	2	0	0	0	0	2	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	1/0	t0018	2295	2	0	1	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0019	2291	2	0	0	2	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0020	2291	2	0	0	2	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0021	2294	2	0	1	1	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0022	2293	1	1	0	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0023	2296	1	1	0	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0024	2296	1	1	0	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0025	2295	1	0	0	0	0	1	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0026	2295	1	0	0	0	0	1	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0027	2295	1	0	0	1	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0028	2295	1	0	1	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0029	2295	1	0	0	0	0	1	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0030	2295	1	1	0	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0031	2292	1	1	0	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0032	2295	1	1	0	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0033	2295	1	1	0	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0034	2291	1	0	1	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0035	2290	1	0	0	1	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0036	2295	1	1	0	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0037	2295	1	0	0	0	1	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0038	2295	1	0	0	1	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0039	2295	1	0	0	1	0	0	copy fasta	H3-3B	chr17	75771434	75784779