JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
H3-3B_chr17_75771434_75784779	0/0	t0040	2294	1	0	0	1	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	t0041	2295	1	0	0	0	0	1	copy fasta	H3-3B	chr17	75771434	75784779
H3-4_chr1_228419845_228430360	0/0	t0001	106	342	94	68	131	12	37	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	1/1	t0002	106	72	6	2	55	4	3	copy fasta	H3-4	chr1	228419845	228430360
H3-5_chr12_31786185_31797298	1/0	t0001	707	203	36	38	101	5	22	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0002	707	72	1	15	44	1	11	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0003	706	51	10	1	31	2	7	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0004	707	36	0	6	23	2	5	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0005	707	34	17	8	3	3	3	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/1	t0006	706	14	9	1	3	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0007	708	9	9	0	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0008	707	6	0	0	6	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0009	707	4	1	3	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0010	707	3	3	0	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0011	707	2	2	0	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0012	707	2	0	2	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0013	708	2	2	0	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0014	707	1	1	0	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0015	707	1	0	0	0	1	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0016	706	1	0	0	1	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0017	708	1	1	0	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0018	707	1	0	0	1	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	t0019	706	1	0	0	1	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-7_chr1_143900510_143910977	0/0	t0001	58	299	80	58	122	14	25	copy fasta	H3-7	chr1	143900510	143910977
H3-7_chr1_143900510_143910977	0/0	t0002	58	1	0	0	0	0	1	copy fasta	H3-7	chr1	143900510	143910977
H3C10_chr6_27805051_27815536	1/1	t0001	76	392	90	66	184	10	40	copy fasta	H3C10	chr6	27805051	27815536
H3C11_chr6_27866845_27877346	1/1	t0001	92	372	88	75	162	8	37	copy fasta	H3C11	chr6	27866845	27877346
H3C11_chr6_27866845_27877346	0/0	t0002	92	2	0	1	0	0	1	copy fasta	H3C11	chr6	27866845	27877346
H3C12_chr6_27885315_27895826	1/1	t0001	102	402	100	70	172	14	44	copy fasta	H3C12	chr6	27885315	27895826
H3C13_chr1_149808225_149818693	0/0	t0000	0	1	0	0	1	0	0	copy fasta	H3C13	chr1	149808225	149818693
H3C13_chr1_149808225_149818693	0/0	t0001	59	372	98	73	145	16	40	copy fasta	H3C13	chr1	149808225	149818693
H3C13_chr1_149808225_149818693	0/0	t0002	59	1	0	1	0	0	0	copy fasta	H3C13	chr1	149808225	149818693
H3C14_chr1_149835687_149846208	0/0	t0001	112	297	80	62	101	14	40	copy fasta	H3C14	chr1	149835687	149846208
H3C14_chr1_149835687_149846208	0/0	t0002	112	4	0	0	4	0	0	copy fasta	H3C14	chr1	149835687	149846208
H3C14_chr1_149835687_149846208	0/0	t0003	112	1	0	0	1	0	0	copy fasta	H3C14	chr1	149835687	149846208
H3C15_chr1_149847608_149858125	0/0	t0001	108	329	81	66	124	14	44	copy fasta	H3C15	chr1	149847608	149858125
H3C15_chr1_149847608_149858125	0/0	t0002	108	2	2	0	0	0	0	copy fasta	H3C15	chr1	149847608	149858125
H3C15_chr1_149847608_149858125	0/0	t0003	108	1	1	0	0	0	0	copy fasta	H3C15	chr1	149847608	149858125
H3C1_chr6_26015451_26025958	1/1	t0001	98	385	94	66	162	18	43	copy fasta	H3C1	chr6	26015451	26025958
H3C1_chr6_26015451_26025958	0/0	t0002	96	4	0	0	4	0	0	copy fasta	H3C1	chr6	26015451	26025958
H3C1_chr6_26015451_26025958	0/0	t0003	98	4	0	0	1	0	3	copy fasta	H3C1	chr6	26015451	26025958
H3C1_chr6_26015451_26025958	0/0	t0004	98	1	1	0	0	0	0	copy fasta	H3C1	chr6	26015451	26025958
H3C1_chr6_26015451_26025958	0/0	t0005	98	1	0	0	1	0	0	copy fasta	H3C1	chr6	26015451	26025958
H3C1_chr6_26015451_26025958	0/0	t0006	98	1	1	0	0	0	0	copy fasta	H3C1	chr6	26015451	26025958
H3C2_chr6_26026589_26037099	0/1	t0001	101	292	83	55	109	15	29	copy fasta	H3C2	chr6	26026589	26037099
H3C2_chr6_26026589_26037099	1/0	t0002	101	73	4	22	24	3	19	copy fasta	H3C2	chr6	26026589	26037099
H3C2_chr6_26026589_26037099	0/0	t0003	101	13	1	0	12	0	0	copy fasta	H3C2	chr6	26026589	26037099
H3C2_chr6_26026589_26037099	0/0	t0004	101	6	6	0	0	0	0	copy fasta	H3C2	chr6	26026589	26037099
H3C2_chr6_26026589_26037099	0/0	t0005	100	5	0	0	5	0	0	copy fasta	H3C2	chr6	26026589	26037099
H3C2_chr6_26026589_26037099	0/0	t0006	97	4	0	0	4	0	0	copy fasta	H3C2	chr6	26026589	26037099