JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
H3C2_chr6_26026589_26037099	0/0	t0007	101	1	1	0	0	0	0	copy fasta	H3C2	chr6	26026589	26037099
H3C2_chr6_26026589_26037099	0/0	t0008	101	1	0	1	0	0	0	copy fasta	H3C2	chr6	26026589	26037099
H3C2_chr6_26026589_26037099	0/0	t0009	101	1	1	0	0	0	0	copy fasta	H3C2	chr6	26026589	26037099
H3C3_chr6_26040384_26050869	1/0	t0001	76	421	94	70	194	16	46	copy fasta	H3C3	chr6	26040384	26050869
H3C4_chr6_26191784_26202286	1/0	t0001	93	325	76	61	146	12	29	copy fasta	H3C4	chr6	26191784	26202286
H3C4_chr6_26191784_26202286	0/1	t0002	93	68	20	9	21	6	11	copy fasta	H3C4	chr6	26191784	26202286
H3C4_chr6_26191784_26202286	0/0	t0003	93	3	0	0	1	0	2	copy fasta	H3C4	chr6	26191784	26202286
H3C6_chr6_26220135_26230616	1/1	t0001	72	346	91	68	130	13	42	copy fasta	H3C6	chr6	26220135	26230616
H3C6_chr6_26220135_26230616	0/0	t0002	72	4	3	0	0	1	0	copy fasta	H3C6	chr6	26220135	26230616
H3C6_chr6_26220135_26230616	0/0	t0003	72	3	3	0	0	0	0	copy fasta	H3C6	chr6	26220135	26230616
H3C6_chr6_26220135_26230616	0/0	t0004	72	1	1	0	0	0	0	copy fasta	H3C6	chr6	26220135	26230616
H3C7_chr6_26245142_26255635	0/0	t0001	84	371	98	71	146	14	42	copy fasta	H3C7	chr6	26245142	26255635
H3C7_chr6_26245142_26255635	0/0	t0002	49	1	0	1	0	0	0	copy fasta	H3C7	chr6	26245142	26255635
H3C8_chr6_26265918_26276413	1/1	t0001	86	398	90	80	172	8	46	copy fasta	H3C8	chr6	26265918	26276413
H3Y1_chr5_17649868_17660849	0/1	t0001	564	327	70	66	143	12	35	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	1/0	t0002	572	41	24	6	6	0	4	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	t0003	564	2	0	0	2	0	0	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	t0004	572	1	0	0	1	0	0	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	t0005	564	1	0	1	0	0	0	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	t0006	564	1	1	0	0	0	0	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	t0007	564	1	1	0	0	0	0	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	t0008	564	1	0	0	0	0	1	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	t0009	564	1	0	1	0	0	0	copy fasta	H3Y1	chr5	17649868	17660849
H3Y2_chr5_17485967_17497076	0/1	t0001	667	375	63	72	185	14	40	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	1/0	t0002	667	12	6	1	1	0	3	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	t0003	667	4	4	0	0	0	0	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	t0004	667	4	4	0	0	0	0	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	t0005	667	2	0	0	0	0	2	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	t0006	667	1	1	0	0	0	0	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	t0007	667	1	0	1	0	0	0	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	t0008	667	1	0	0	0	0	1	copy fasta	H3Y2	chr5	17485967	17497076
H4C11_chr6_27819092_27829480	0/0	t0000	0	1	0	1	0	0	0	copy fasta	H4C11	chr6	27819092	27829480
H4C11_chr6_27819092_27829480	0/0	t0001	78	359	89	72	152	15	31	copy fasta	H4C11	chr6	27819092	27829480
H4C11_chr6_27819092_27829480	0/0	t0002	78	27	0	8	16	0	3	copy fasta	H4C11	chr6	27819092	27829480
H4C11_chr6_27819092_27829480	0/0	t0003	78	3	0	0	1	0	2	copy fasta	H4C11	chr6	27819092	27829480
H4C11_chr6_27819092_27829480	0/0	t0004	78	2	0	1	0	1	0	copy fasta	H4C11	chr6	27819092	27829480
H4C11_chr6_27819092_27829480	0/0	t0005	78	1	0	0	1	0	0	copy fasta	H4C11	chr6	27819092	27829480
H4C11_chr6_27819092_27829480	0/0	t0006	78	1	1	0	0	0	0	copy fasta	H4C11	chr6	27819092	27829480
H4C11_chr6_27819092_27829480	0/0	t0007	78	1	1	0	0	0	0	copy fasta	H4C11	chr6	27819092	27829480
H4C11_chr6_27819092_27829480	0/0	t0008	78	1	1	0	0	0	0	copy fasta	H4C11	chr6	27819092	27829480
H4C12_chr6_27826174_27836560	0/1	t0001	76	403	83	85	178	16	40	copy fasta	H4C12	chr6	27826174	27836560
H4C12_chr6_27826174_27836560	0/0	t0002	76	16	15	1	0	0	0	copy fasta	H4C12	chr6	27826174	27836560
H4C13_chr6_27868148_27878534	1/1	t0001	76	377	88	70	168	7	42	copy fasta	H4C13	chr6	27868148	27878534
H4C13_chr6_27868148_27878534	0/0	t0002	76	7	0	6	0	1	0	copy fasta	H4C13	chr6	27868148	27878534
H4C14_chr1_149827657_149838052	0/0	t0001	85	225	72	50	61	6	36	copy fasta	H4C14	chr1	149827657	149838052
H4C14_chr1_149827657_149838052	0/0	t0002	85	6	0	6	0	0	0	copy fasta	H4C14	chr1	149827657	149838052
H4C14_chr1_149827657_149838052	0/0	t0003	85	4	4	0	0	0	0	copy fasta	H4C14	chr1	149827657	149838052
H4C14_chr1_149827657_149838052	0/0	t0004	85	1	0	0	1	0	0	copy fasta	H4C14	chr1	149827657	149838052
H4C15_chr1_149855764_149866159	0/0	t0001	85	201	52	35	84	8	22	copy fasta	H4C15	chr1	149855764	149866159
H4C15_chr1_149855764_149866159	0/0	t0002	85	3	0	3	0	0	0	copy fasta	H4C15	chr1	149855764	149866159