JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
H4C15_chr1_149855764_149866159	0/0	t0003	85	2	2	0	0	0	0	copy fasta	H4C15	chr1	149855764	149866159
H4C16_chr12_14765720_14776131	1/1	t0001	101	377	62	61	198	12	42	copy fasta	H4C16	chr12	14765720	14776131
H4C16_chr12_14765720_14776131	0/0	t0002	101	61	28	17	8	4	4	copy fasta	H4C16	chr12	14765720	14776131
H4C1_chr6_26016649_26027050	1/1	t0001	91	375	83	59	169	17	45	copy fasta	H4C1	chr6	26016649	26027050
H4C1_chr6_26016649_26027050	0/0	t0002	91	22	13	5	2	1	1	copy fasta	H4C1	chr6	26016649	26027050
H4C1_chr6_26016649_26027050	0/0	t0003	91	1	0	0	1	0	0	copy fasta	H4C1	chr6	26016649	26027050
H4C2_chr6_26021896_26032283	1/0	t0001	77	211	75	36	63	8	28	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/1	t0002	77	169	13	29	98	10	18	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	t0003	77	7	7	0	0	0	0	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	t0004	77	6	0	6	0	0	0	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	t0005	77	5	0	3	0	0	2	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	t0006	77	1	0	0	1	0	0	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	t0007	77	1	1	0	0	0	0	copy fasta	H4C2	chr6	26021896	26032283
H4C3_chr6_26098933_26109337	1/1	t0001	94	405	97	78	172	14	42	copy fasta	H4C3	chr6	26098933	26109337
H4C3_chr6_26098933_26109337	0/0	t0002	94	1	1	0	0	0	0	copy fasta	H4C3	chr6	26098933	26109337
H4C3_chr6_26098933_26109337	0/0	t0003	94	1	1	0	0	0	0	copy fasta	H4C3	chr6	26098933	26109337
H4C3_chr6_26098933_26109337	0/0	t0004	94	1	1	0	0	0	0	copy fasta	H4C3	chr6	26098933	26109337
H4C4_chr6_26183710_26194112	1/0	t0001	92	304	75	50	137	10	31	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	t0002	92	46	16	5	17	3	5	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/1	t0003	92	20	5	4	5	1	4	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	t0004	92	1	0	0	1	0	0	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	t0005	92	1	0	1	0	0	0	copy fasta	H4C4	chr6	26183710	26194112
H4C5_chr6_26199610_26210021	1/1	t0001	101	406	93	72	179	18	42	copy fasta	H4C5	chr6	26199610	26210021
H4C5_chr6_26199610_26210021	0/0	t0002	101	1	0	0	1	0	0	copy fasta	H4C5	chr6	26199610	26210021
H4C5_chr6_26199610_26210021	0/0	t0003	101	1	1	0	0	0	0	copy fasta	H4C5	chr6	26199610	26210021
H4C6_chr6_26235393_26245793	1/0	t0001	90	274	78	48	111	4	32	copy fasta	H4C6	chr6	26235393	26245793
H4C6_chr6_26235393_26245793	0/0	t0002	90	48	14	11	7	9	7	copy fasta	H4C6	chr6	26235393	26245793
H4C6_chr6_26235393_26245793	0/1	t0003	90	33	6	5	16	0	5	copy fasta	H4C6	chr6	26235393	26245793
H4C6_chr6_26235393_26245793	0/0	t0004	90	2	0	2	0	0	0	copy fasta	H4C6	chr6	26235393	26245793
H4C6_chr6_26235393_26245793	0/0	t0005	90	2	0	0	2	0	0	copy fasta	H4C6	chr6	26235393	26245793
H4C6_chr6_26235393_26245793	0/0	t0006	90	1	0	0	0	1	0	copy fasta	H4C6	chr6	26235393	26245793
H4C7_chr6_26241611_26251996	1/1	t0001	90	365	96	68	144	14	41	copy fasta	H4C7	chr6	26241611	26251996
H4C7_chr6_26241611_26251996	0/0	t0002	90	1	0	0	0	0	1	copy fasta	H4C7	chr6	26241611	26251996
H4C8_chr6_26280126_26290534	1/1	t0001	98	330	72	67	148	5	36	copy fasta	H4C8	chr6	26280126	26290534
H4C8_chr6_26280126_26290534	0/0	t0002	98	42	11	8	7	10	6	copy fasta	H4C8	chr6	26280126	26290534
H4C8_chr6_26280126_26290534	0/0	t0003	98	18	7	3	3	1	4	copy fasta	H4C8	chr6	26280126	26290534
H4C8_chr6_26280126_26290534	0/0	t0004	98	13	0	0	13	0	0	copy fasta	H4C8	chr6	26280126	26290534
H4C8_chr6_26280126_26290534	0/0	t0005	98	1	0	0	1	0	0	copy fasta	H4C8	chr6	26280126	26290534
H4C8_chr6_26280126_26290534	0/0	t0006	98	1	0	1	0	0	0	copy fasta	H4C8	chr6	26280126	26290534
H4C8_chr6_26280126_26290534	0/0	t0007	98	1	0	1	0	0	0	copy fasta	H4C8	chr6	26280126	26290534
H4C9_chr6_27134282_27144678	1/1	t0001	86	386	91	71	166	18	38	copy fasta	H4C9	chr6	27134282	27144678
H4C9_chr6_27134282_27144678	0/0	t0002	86	3	2	1	0	0	0	copy fasta	H4C9	chr6	27134282	27144678
H4C9_chr6_27134282_27144678	0/0	t0003	86	2	0	2	0	0	0	copy fasta	H4C9	chr6	27134282	27144678
H4C9_chr6_27134282_27144678	0/0	t0004	86	1	1	0	0	0	0	copy fasta	H4C9	chr6	27134282	27144678
H6PD_chr1_9229774_9276337	0/0	t0001	6771	82	3	21	47	3	8	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0002	6771	38	0	8	28	1	1	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0003	6786	19	0	6	7	4	2	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0004	6771	17	0	4	8	1	4	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0005	6763	16	0	6	0	2	8	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/1	t0006	6771	15	5	0	4	2	3	copy fasta	H6PD	chr1	9229774	9276337