JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
H6PD_chr1_9229774_9276337	0/0	t0007	6767	15	13	2	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0008	6768	14	0	2	9	0	3	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0009	6784	10	10	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0010	6771	6	0	0	6	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0011	6771	5	5	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0012	6784	5	3	2	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0013	6771	5	0	3	0	0	2	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0014	6784	5	5	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0015	6770	4	1	0	3	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0016	6771	4	0	0	4	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0017	6771	4	0	0	4	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0018	6771	3	0	1	0	2	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0019	6773	3	0	3	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0020	6767	3	3	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0021	6786	3	0	2	0	0	1	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0022	6768	3	0	0	2	0	1	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0023	6772	3	0	0	3	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0024	6772	3	0	0	3	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0025	6771	3	1	0	0	1	1	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0026	6771	3	0	0	3	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0027	6786	3	0	0	3	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0028	6764	3	0	0	0	0	3	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0029	6784	3	3	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0030	6772	2	2	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0031	6771	2	2	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0032	6786	2	0	0	1	1	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0033	6770	2	0	0	0	0	2	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0034	6784	2	2	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0035	6784	2	1	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0036	6771	2	2	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0037	6784	2	2	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0038	6786	2	0	0	2	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0039	6771	2	0	0	2	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0040	6786	2	0	2	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0041	6784	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0042	6771	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0043	6766	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0044	6763	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0045	6772	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0046	6772	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0047	6771	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0048	6783	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0049	6784	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0050	6785	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0051	6773	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0052	6771	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0053	6770	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0054	6771	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0055	6772	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0056	6771	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337