JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
H6PD_chr1_9229774_9276337	0/0	t0057	6771	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0058	6771	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	1/0	t0059	6772	1	0	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0060	6771	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0061	6771	1	0	0	0	0	1	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0062	6771	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0063	6786	1	0	0	0	1	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0064	6785	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0065	6784	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0066	6787	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0067	6786	1	0	0	0	0	1	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0068	6785	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0069	6784	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0070	6783	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0071	6783	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0072	6785	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0073	6784	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0074	6783	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0075	6782	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0076	6785	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0077	6772	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0078	6767	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0079	6766	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0080	6771	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0081	6772	1	0	0	0	0	1	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0082	6785	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0083	6772	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0084	6766	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0085	6767	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0086	6770	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0087	6767	1	0	0	0	0	1	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0088	6763	1	0	0	0	0	1	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0089	6768	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0090	6763	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0091	6773	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0092	6772	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0093	6771	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0094	6771	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0095	6770	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0096	6772	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0097	6771	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0098	6771	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0099	6771	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0100	6771	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0101	6771	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0102	6771	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0103	6784	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0104	6771	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0105	6771	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0106	6770	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337