JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
H6PD_chr1_9229774_9276337	0/0	t0107	6785	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0108	6784	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0109	6782	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0110	6783	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0111	6784	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0112	6771	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0113	6771	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0114	6784	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0115	6767	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0116	6771	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0117	6766	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0118	6771	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0119	6786	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0120	6786	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0121	6785	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	t0122	6769	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
HAAO_chr2_42762089_42797583	1/1	t0001	396	346	65	68	148	14	49	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	t0002	396	28	8	9	8	2	1	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	t0003	396	10	0	0	10	0	0	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	t0004	396	10	9	1	0	0	0	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	t0005	396	9	8	1	0	0	0	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	t0006	396	3	0	3	0	0	0	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	t0007	396	1	1	0	0	0	0	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	t0008	396	1	1	0	0	0	0	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	t0009	396	1	0	0	1	0	0	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	t0010	396	1	0	0	1	0	0	copy fasta	HAAO	chr2	42762089	42797583
HABP2_chr10_113548053_113594602	1/1	t0001	1303	264	59	41	124	9	29	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0002	1302	123	29	25	54	5	10	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0003	1302	39	4	8	19	3	5	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0004	1302	4	4	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0005	1303	2	0	1	0	1	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0006	1303	1	1	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0007	1302	1	1	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0008	1303	1	0	0	1	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0009	1303	1	0	1	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0010	1303	1	0	0	1	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0011	1303	1	1	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0012	1313	1	0	0	1	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0013	1302	1	0	0	1	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0014	1303	1	1	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0015	1302	1	0	0	0	0	1	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0016	1303	1	0	0	0	0	1	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0017	1302	1	0	1	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0018	1302	1	0	1	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	t0019	1303	1	0	0	1	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP4_chr9_96445169_96496336	1/1	t0001	1410	222	35	43	100	12	30	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	t0002	1410	47	24	11	8	1	3	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	t0003	1410	21	19	2	0	0	0	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	t0004	1410	4	0	1	0	2	1	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	t0005	1410	3	3	0	0	0	0	copy fasta	HABP4	chr9	96445169	96496336