JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HABP4_chr9_96445169_96496336	0/0	t0006	1410	2	2	0	0	0	0	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	t0007	1410	1	0	0	0	1	0	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	t0008	1410	1	0	0	1	0	0	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	t0009	1410	1	0	1	0	0	0	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	t0010	1410	1	0	0	0	0	1	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	t0011	1410	1	0	0	0	0	1	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	t0012	1410	1	0	0	1	0	0	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	t0013	1410	1	1	0	0	0	0	copy fasta	HABP4	chr9	96445169	96496336
HACD1_chr10_17584032_17622374	1/1	t0001	1368	159	36	38	57	7	19	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0002	1369	139	13	19	95	5	7	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0003	1369	39	26	4	5	0	4	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0004	1369	22	2	0	19	1	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0005	1369	20	1	11	1	4	3	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0006	1370	11	9	0	0	0	2	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0007	1369	3	3	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0008	1369	3	0	3	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0009	1369	2	1	1	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0010	1369	2	0	0	2	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0011	1368	1	0	0	0	1	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0012	1369	1	1	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0013	1368	1	0	0	1	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0014	1369	1	0	0	0	0	1	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0015	1369	1	1	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0016	1370	1	1	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0017	1369	1	1	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0018	1368	1	0	0	1	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0019	1368	1	1	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	t0020	1369	1	0	0	1	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD2_chr3_123486554_123590053	0/0	t0001	3361	87	5	15	54	5	8	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0002	3361	64	9	9	36	2	8	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0003	3361	61	14	5	38	0	4	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/1	t0004	3361	39	0	13	10	3	12	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0005	3361	26	15	6	5	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	1/0	t0006	3361	24	20	3	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0007	3361	8	0	5	1	1	1	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0008	3361	7	6	1	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0009	3361	4	0	0	4	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0010	3361	4	4	0	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0011	3361	2	2	0	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0012	3361	2	2	0	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0013	3361	2	2	0	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0014	3361	2	2	0	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0015	3361	2	2	0	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0016	3361	1	1	0	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0017	3361	1	1	0	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0018	3361	1	1	0	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0019	3361	1	1	0	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0020	3361	1	0	1	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0021	3361	1	0	0	0	0	1	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0022	3361	1	0	0	1	0	0	copy fasta	HACD2	chr3	123486554	123590053