JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HACD2_chr3_123486554_123590053	0/0	t0023	3361	1	0	1	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0024	3361	1	0	0	0	0	1	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0025	3361	1	0	0	1	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0026	3361	1	0	1	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0027	3361	1	0	0	1	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0028	3307	1	0	0	1	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0029	3361	1	0	0	0	0	1	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0030	3361	1	1	0	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	t0031	3361	1	0	0	0	1	0	copy fasta	HACD2	chr3	123486554	123590053
HACD3_chr15_65525463_65583349	0/1	t0001	2140	191	25	32	100	7	26	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0002	2140	67	34	14	7	5	7	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0003	2140	22	6	5	7	0	4	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0004	2143	9	9	0	0	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0005	2145	7	5	2	0	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0006	2140	7	7	0	0	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0007	2140	5	1	0	4	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0008	2140	3	0	0	3	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0009	2140	3	2	0	0	0	1	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0010	2140	2	2	0	0	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0011	2140	2	0	0	0	0	2	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0012	2140	2	2	0	0	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0013	2140	1	1	0	0	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	1/0	t0014	2140	1	0	0	0	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0015	2140	1	0	0	0	0	1	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0016	2140	1	0	0	1	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0017	2140	1	0	0	1	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0018	2140	1	0	0	0	0	1	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0019	2140	1	0	1	0	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	t0020	2140	1	0	0	1	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD4_chr9_20994509_21036640	0/0	t0001	7580	73	3	14	48	3	5	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0002	7580	61	8	8	38	2	5	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0003	7580	57	1	12	39	2	3	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0004	7580	37	9	2	17	2	7	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0005	7579	26	0	3	14	3	6	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0006	7579	23	5	10	0	0	8	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0007	7580	14	0	0	13	0	1	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0008	7580	14	12	1	0	0	1	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0009	7579	14	0	0	14	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	1/0	t0010	7579	13	12	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0011	7580	12	12	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0012	7580	10	0	0	9	0	1	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0013	7580	10	6	3	0	1	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0014	7579	9	5	4	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0015	7580	5	5	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0016	7580	3	0	3	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0017	7580	3	3	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0018	7457	3	3	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0019	7580	3	2	1	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0020	7580	3	3	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0021	7579	2	0	0	2	0	0	copy fasta	HACD4	chr9	20994509	21036640