JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HACD4_chr9_20994509_21036640	0/0	t0022	7580	2	0	0	2	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0023	7580	2	0	0	2	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0024	7580	2	0	2	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0025	7578	2	0	0	2	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0026	7580	2	2	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0027	7579	1	0	1	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0028	7580	1	0	0	0	0	1	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0029	7579	1	0	1	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0030	7579	1	0	1	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0031	7579	1	0	0	0	1	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/1	t0032	7579	1	0	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0033	7580	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0034	7580	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0035	7580	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0036	7580	1	1	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0037	7580	1	1	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0038	7580	1	1	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0039	7580	1	0	0	0	0	1	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0040	7580	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0041	7580	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0042	7580	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0043	7580	1	0	1	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0044	7580	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0045	7580	1	0	1	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0046	7580	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0047	7580	1	0	0	0	0	1	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0048	7580	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0049	7580	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0050	7580	1	1	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0051	7578	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0052	7580	1	1	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0053	7580	1	1	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0054	7580	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	t0055	7579	1	1	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACE1_chr6_104723094_104864919	1/1	t0001	1846	269	70	49	107	11	30	copy fasta	HACE1	chr6	104723094	104864919
HACE1_chr6_104723094_104864919	0/0	t0002	1846	71	11	11	43	2	4	copy fasta	HACE1	chr6	104723094	104864919
HACE1_chr6_104723094_104864919	0/0	t0003	1846	1	0	0	1	0	0	copy fasta	HACE1	chr6	104723094	104864919
HACE1_chr6_104723094_104864919	0/0	t0004	1846	1	0	0	1	0	0	copy fasta	HACE1	chr6	104723094	104864919
HACE1_chr6_104723094_104864919	0/0	t0005	1846	1	0	0	0	0	1	copy fasta	HACE1	chr6	104723094	104864919
HACE1_chr6_104723094_104864919	0/0	t0006	1846	1	0	0	0	0	1	copy fasta	HACE1	chr6	104723094	104864919
HACE1_chr6_104723094_104864919	0/0	t0007	1846	1	0	0	0	1	0	copy fasta	HACE1	chr6	104723094	104864919
HACE1_chr6_104723094_104864919	0/0	t0008	1846	1	1	0	0	0	0	copy fasta	HACE1	chr6	104723094	104864919
HACL1_chr3_15555699_15606569	0/1	t0001	273	413	94	69	193	10	46	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	1/0	t0002	273	11	0	5	3	0	2	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	t0003	268	3	3	0	0	0	0	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	t0004	273	1	1	0	0	0	0	copy fasta	HACL1	chr3	15555699	15606569
HADHA_chr2_26185635_26249632	0/1	t0001	652	198	53	50	73	2	19	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	t0002	652	40	0	8	23	2	7	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	t0003	652	17	14	3	0	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	1/0	t0004	652	10	1	4	4	0	0	copy fasta	HADHA	chr2	26185635	26249632