JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HADHA_chr2_26185635_26249632	0/0	t0005	652	3	3	0	0	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	t0006	652	2	2	0	0	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	t0007	652	1	0	0	1	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	t0008	652	1	0	0	1	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	t0009	652	1	0	1	0	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	t0010	652	1	1	0	0	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHB_chr2_26239939_26295465	0/1	t0001	573	175	50	46	41	14	23	copy fasta	HADHB	chr2	26239939	26295465
HADHB_chr2_26239939_26295465	1/0	t0002	573	94	13	19	54	0	7	copy fasta	HADHB	chr2	26239939	26295465
HADHB_chr2_26239939_26295465	0/0	t0003	573	8	8	0	0	0	0	copy fasta	HADHB	chr2	26239939	26295465
HADHB_chr2_26239939_26295465	0/0	t0004	573	6	4	2	0	0	0	copy fasta	HADHB	chr2	26239939	26295465
HADHB_chr2_26239939_26295465	0/0	t0005	573	6	3	3	0	0	0	copy fasta	HADHB	chr2	26239939	26295465
HADHB_chr2_26239939_26295465	0/0	t0006	573	1	0	0	1	0	0	copy fasta	HADHB	chr2	26239939	26295465
HADH_chr4_107984889_108040171	1/0	t0001	859	230	51	50	84	15	29	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/1	t0002	859	45	31	3	5	0	5	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	t0003	859	21	2	9	4	1	5	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	t0004	859	3	0	0	3	0	0	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	t0005	859	2	2	0	0	0	0	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	t0006	859	1	0	0	1	0	0	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	t0007	859	1	0	0	0	0	1	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	t0008	859	1	0	0	1	0	0	copy fasta	HADH	chr4	107984889	108040171
HAGHL_chr16_722106_734715	0/0	t0001	664	219	32	40	115	3	29	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	1/0	t0002	664	79	15	24	29	5	5	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/1	t0003	664	70	38	11	3	4	13	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	t0004	664	13	10	3	0	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	t0005	664	5	4	1	0	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	t0006	664	3	0	0	3	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	t0007	664	2	0	0	2	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	t0008	664	1	0	0	0	0	1	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	t0009	664	1	0	0	1	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	t0010	664	1	1	0	0	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	t0011	664	1	0	1	0	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	t0012	664	1	0	0	1	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	t0013	664	1	0	0	1	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	t0014	664	1	0	0	1	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGH_chr16_1802629_1831825	0/0	t0001	1694	129	3	31	73	7	15	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/1	t0002	1694	77	33	9	25	1	8	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0003	1693	70	17	16	31	1	5	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0004	1694	41	11	0	23	2	5	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0005	1693	37	4	3	23	0	7	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0006	1694	11	11	0	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0007	1694	9	3	1	2	0	3	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0008	1693	8	0	2	5	1	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0009	1694	6	2	4	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0010	1694	6	0	0	6	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0011	1693	4	0	0	4	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0012	1694	4	0	1	3	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0013	1694	2	0	0	2	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0014	1693	2	0	0	2	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0015	1693	2	0	2	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0016	1694	2	2	0	0	0	0	copy fasta	HAGH	chr16	1802629	1831825