JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HAGH_chr16_1802629_1831825	0/0	t0017	1693	2	2	0	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0018	1694	2	2	0	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0019	1694	2	0	2	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0020	1693	1	0	0	0	0	1	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0021	1694	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0022	1694	1	1	0	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	1/0	t0023	1693	1	0	0	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0024	1692	1	0	0	0	0	1	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0025	1694	1	1	0	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0026	1694	1	1	0	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0027	1694	1	0	0	0	0	1	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0028	1694	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0029	1694	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0030	1694	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0031	1694	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0032	1694	1	0	1	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0033	1694	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0034	1694	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0035	1694	1	0	1	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0036	1694	1	1	0	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0037	1694	1	0	1	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0038	1694	1	0	0	0	0	1	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	t0039	1694	1	0	0	0	0	1	copy fasta	HAGH	chr16	1802629	1831825
HAL_chr12_95967662_96001344	0/0	t0001	1919	124	6	23	80	4	11	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/1	t0002	1918	47	4	15	6	3	18	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	1/0	t0003	1919	47	12	15	9	7	3	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0004	1919	45	7	1	34	0	3	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0005	1922	39	11	3	17	1	7	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0006	1919	14	14	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0007	1923	10	0	7	0	1	2	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0008	1919	8	0	0	7	0	1	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0009	1922	7	6	1	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0010	1918	6	1	0	5	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0011	1918	6	6	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0012	1922	5	5	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0013	1919	5	5	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0014	1919	4	0	0	4	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0015	1922	4	3	1	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0016	1918	4	1	2	0	1	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0017	1919	4	0	0	4	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0018	1922	3	0	0	2	0	1	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0019	1918	3	0	1	2	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0020	1919	3	0	0	3	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0021	1919	3	0	0	3	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0022	1918	2	1	1	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0023	1919	2	2	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0024	1919	2	0	0	2	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0025	1919	2	2	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0026	1918	2	0	1	0	1	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0027	1922	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344