JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HAL_chr12_95967662_96001344	0/0	t0028	1919	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0029	1919	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0030	1922	1	1	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0031	1919	1	1	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0032	1919	1	1	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0033	1919	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0034	1919	1	1	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0035	1922	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0036	1923	1	0	1	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0037	1918	1	1	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0038	1918	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0039	1918	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0040	1919	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0041	1919	1	1	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0042	1919	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	t0043	1919	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAMP_chr19_35277528_35290143	1/1	t0001	152	446	98	82	200	16	48	copy fasta	HAMP	chr19	35277528	35290143
HAMP_chr19_35277528_35290143	0/0	t0002	152	1	1	0	0	0	0	copy fasta	HAMP	chr19	35277528	35290143
HAMP_chr19_35277528_35290143	0/0	t0003	152	1	1	0	0	0	0	copy fasta	HAMP	chr19	35277528	35290143
HAND1_chr5_154469972_154483227	1/0	t0001	1054	320	58	54	147	14	46	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/1	t0002	1054	68	13	9	42	3	0	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/0	t0003	1054	49	16	13	15	1	4	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/0	t0004	1054	2	2	0	0	0	0	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/0	t0005	1054	2	2	0	0	0	0	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/0	t0006	1054	2	0	2	0	0	0	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/0	t0007	1054	1	0	0	1	0	0	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/0	t0008	1054	1	0	0	1	0	0	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/0	t0009	1054	1	1	0	0	0	0	copy fasta	HAND1	chr5	154469972	154483227
HAND2_chr4_173521091_173535229	1/0	t0001	2127	147	38	30	57	6	15	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/1	t0002	2128	96	12	25	41	5	12	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0003	2127	73	1	11	49	2	10	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0004	2127	45	6	10	21	2	6	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0005	2126	20	1	0	19	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0006	2127	12	12	0	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0007	2127	9	8	1	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0008	2128	4	0	0	4	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0009	2127	4	0	0	4	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0010	2126	4	2	0	0	0	2	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0011	2127	4	0	0	4	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0012	2127	3	1	1	0	1	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0013	2127	3	3	0	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0014	2128	3	3	0	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0015	2127	3	0	0	3	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0016	2127	2	0	0	2	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0017	2127	2	0	0	2	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0018	2127	2	2	0	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0019	2126	2	0	0	1	0	1	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0020	2127	1	1	0	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0021	2127	1	0	0	1	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0022	2127	1	1	0	0	0	0	copy fasta	HAND2	chr4	173521091	173535229