JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HAND2_chr4_173521091_173535229	0/0	t0023	2128	1	1	0	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0024	2127	1	0	0	1	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0025	2127	1	0	0	0	0	1	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0026	2127	1	0	0	1	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0027	2127	1	0	0	0	0	1	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0028	2127	1	0	0	1	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0029	2127	1	0	0	1	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0030	2127	1	0	0	1	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0031	2128	1	0	0	1	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0032	2127	1	1	0	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0033	2127	1	1	0	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0034	2127	1	1	0	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0035	2126	1	0	0	1	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0036	2127	1	1	0	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0037	2126	1	0	0	1	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0038	2126	1	1	0	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0039	2127	1	0	0	1	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0040	2127	1	0	0	1	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	t0041	2126	1	1	0	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAO1_chr20_7877985_7945458	1/1	t0001	645	268	84	54	80	10	38	copy fasta	HAO1	chr20	7877985	7945458
HAO1_chr20_7877985_7945458	0/0	t0002	645	76	12	6	54	1	3	copy fasta	HAO1	chr20	7877985	7945458
HAO1_chr20_7877985_7945458	0/0	t0003	645	2	2	0	0	0	0	copy fasta	HAO1	chr20	7877985	7945458
HAO1_chr20_7877985_7945458	0/0	t0004	645	1	0	0	0	1	0	copy fasta	HAO1	chr20	7877985	7945458
HAO1_chr20_7877985_7945458	0/0	t0005	645	1	0	0	0	0	1	copy fasta	HAO1	chr20	7877985	7945458
HAO2_chr1_119363785_119399130	1/0	t0001	417	393	71	65	193	17	46	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	t0002	417	17	17	0	0	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	t0003	417	5	0	4	1	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/1	t0004	416	4	0	0	0	1	2	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	t0005	417	3	2	1	0	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	t0006	417	3	3	0	0	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	t0007	417	1	0	0	1	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	t0008	417	1	0	0	1	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	t0009	417	1	1	0	0	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAP1_chr17_41717640_41739643	0/1	t0001	2068	258	35	59	116	15	32	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	1/0	t0002	2071	40	8	6	19	3	3	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0003	2071	11	10	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0004	2072	10	9	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0005	2068	7	6	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0006	2068	6	6	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0007	2068	5	0	5	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0008	2068	4	4	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0009	2068	3	0	0	3	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0010	2068	3	1	1	0	0	1	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0011	2088	3	3	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0012	2071	3	3	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0013	2071	3	3	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0014	2068	3	3	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0015	2071	2	1	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0016	2071	2	2	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0017	2068	1	0	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643