Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMZ1_chr7_2683202_2724683	0/0	t0131	7121	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0132	7118	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0133	7120	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0134	7119	1	0	0	0	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0135	7123	1	0	0	0	1	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0136	7122	1	0	0	0	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0137	7122	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0138	7123	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0139	7122	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0140	7123	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0141	7123	1	0	0	0	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0142	7123	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0143	7120	1	0	0	0	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0144	7120	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0145	7120	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0146	7120	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0147	7121	1	0	0	0	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0148	7120	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0149	7116	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0150	7120	1	0	0	0	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0151	7120	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0152	7121	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0153	7121	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0154	7120	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0155	7120	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0156	7120	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0157	7122	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0158	7119	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0159	7119	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0160	7120	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0161	7119	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ2_chr17_68243043_68262155	0/1	t0001	850	254	72	47	99	10	25	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	1/0	t0002	850	87	5	23	33	7	18	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	t0003	850	50	9	9	27	0	5	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	t0004	850	24	0	0	24	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	t0005	850	6	4	2	0	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	t0006	850	5	0	0	5	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	t0007	850	4	0	0	4	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	t0008	850	3	0	0	0	1	2	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	t0009	850	2	2	0	0	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	t0010	850	1	0	0	1	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	t0011	850	1	0	1	0	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	t0012	850	1	0	0	1	0	0	copy fasta	AMZ2	chr17	68243043	68262155
ANAPC10_chr4_144989576_145103196	1/1	t0001	887	316	72	57	134	13	38	copy fasta	ANAPC10	chr4	144989576	145103196
ANAPC10_chr4_144989576_145103196	0/0	t0002	886	5	1	3	0	1	0	copy fasta	ANAPC10	chr4	144989576	145103196
ANAPC10_chr4_144989576_145103196	0/0	t0003	889	4	4	0	0	0	0	copy fasta	ANAPC10	chr4	144989576	145103196
ANAPC10_chr4_144989576_145103196	0/0	t0004	887	2	2	0	0	0	0	copy fasta	ANAPC10	chr4	144989576	145103196
ANAPC10_chr4_144989576_145103196	0/0	t0005	887	2	0	0	2	0	0	copy fasta	ANAPC10	chr4	144989576	145103196
ANAPC10_chr4_144989576_145103196	0/0	t0006	887	2	1	1	0	0	0	copy fasta	ANAPC10	chr4	144989576	145103196
ANAPC10_chr4_144989576_145103196	0/0	t0007	887	1	0	0	1	0	0	copy fasta	ANAPC10	chr4	144989576	145103196