JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HAP1_chr17_41717640_41739643	0/0	t0018	2068	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0019	2068	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0020	2068	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0021	2068	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0022	2068	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0023	2068	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0024	2068	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0025	2071	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0026	2068	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	t0027	2071	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAPLN1_chr5_83632805_83725855	0/0	t0001	3786	98	11	18	47	4	18	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	1/0	t0002	3785	75	9	11	40	4	10	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0003	3785	46	2	9	29	3	3	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0004	3785	33	9	3	14	0	7	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0005	3784	20	18	2	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0006	3786	9	6	3	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0007	3786	5	0	0	5	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0008	3787	5	3	0	1	1	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0009	3785	4	0	1	0	2	1	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/1	t0010	3785	4	0	0	0	0	3	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0011	3784	4	1	1	2	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0012	3786	4	1	0	3	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0013	3785	4	0	0	4	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0014	3785	3	3	0	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0015	3786	3	3	0	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0016	3785	3	0	1	0	1	1	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0017	3785	3	0	0	3	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0018	3786	3	2	1	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0019	3786	3	0	0	3	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0020	3786	3	3	0	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0021	3784	3	3	0	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0022	3786	2	1	0	1	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0023	3786	2	0	0	1	0	1	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0024	3786	2	2	0	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0025	3785	2	0	2	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0026	3785	2	2	0	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0027	3785	2	0	0	1	0	1	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0028	3786	1	0	0	1	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0029	3787	1	0	0	1	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0030	3785	1	0	0	0	0	1	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0031	3785	1	0	0	0	0	1	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0032	3785	1	1	0	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0033	3786	1	0	0	0	0	1	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0034	3786	1	1	0	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0035	3785	1	0	0	0	0	1	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0036	3785	1	1	0	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0037	3785	1	0	0	1	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0038	3786	1	0	0	1	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0039	3785	1	0	1	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0040	3785	1	0	0	0	0	1	copy fasta	HAPLN1	chr5	83632805	83725855