JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HAPLN1_chr5_83632805_83725855	0/0	t0041	3786	1	0	0	1	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0042	3786	1	0	0	1	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0043	3786	1	0	0	1	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0044	3784	1	0	0	1	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0045	3783	1	0	1	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0046	3786	1	0	0	1	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0047	3786	1	1	0	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0048	3785	1	0	0	1	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0049	3787	1	1	0	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0050	3785	1	0	0	1	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0051	3785	1	0	0	0	1	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	t0052	3786	1	0	0	1	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN2_chr1_156614415_156630725	0/1	t0001	628	330	33	72	171	14	39	copy fasta	HAPLN2	chr1	156614415	156630725
HAPLN2_chr1_156614415_156630725	1/0	t0002	628	73	54	6	9	2	1	copy fasta	HAPLN2	chr1	156614415	156630725
HAPLN2_chr1_156614415_156630725	0/0	t0003	628	6	6	0	0	0	0	copy fasta	HAPLN2	chr1	156614415	156630725
HAPLN2_chr1_156614415_156630725	0/0	t0004	628	5	5	0	0	0	0	copy fasta	HAPLN2	chr1	156614415	156630725
HAPLN2_chr1_156614415_156630725	0/0	t0005	682	1	0	0	1	0	0	copy fasta	HAPLN2	chr1	156614415	156630725
HAPLN2_chr1_156614415_156630725	0/0	t0006	628	1	1	0	0	0	0	copy fasta	HAPLN2	chr1	156614415	156630725
HAPLN2_chr1_156614415_156630725	0/0	t0007	628	1	1	0	0	0	0	copy fasta	HAPLN2	chr1	156614415	156630725
HAPLN2_chr1_156614415_156630725	0/0	t0008	628	1	0	0	1	0	0	copy fasta	HAPLN2	chr1	156614415	156630725
HAPLN3_chr15_88872294_88900544	1/1	t0001	810	327	42	68	163	13	39	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	t0002	810	81	46	4	30	1	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	t0003	810	11	0	5	0	4	2	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	t0004	810	3	3	0	0	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	t0005	810	3	0	0	0	0	3	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	t0006	810	2	2	0	0	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	t0007	810	2	0	0	2	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	t0008	810	1	0	1	0	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	t0009	810	1	1	0	0	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	t0010	810	1	1	0	0	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	t0011	810	1	0	0	1	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	t0012	810	1	1	0	0	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	t0013	810	1	0	0	0	0	1	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	t0014	810	1	0	0	0	0	1	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN4_chr19_19249756_19267804	1/0	t0001	3134	262	48	56	117	12	28	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0002	3134	32	14	8	0	3	7	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0003	3134	25	0	0	20	1	4	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0004	3134	14	0	0	14	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0005	3134	12	12	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0006	3134	8	4	0	4	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0007	3134	4	0	1	1	2	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0008	3134	4	0	4	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0009	3134	3	0	3	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0010	3134	2	2	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0011	3134	2	0	0	2	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0012	3134	2	2	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0013	3134	2	0	0	0	0	2	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0014	3134	2	2	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0015	3134	2	0	2	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0016	3134	1	0	1	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804