JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HAPLN4_chr19_19249756_19267804	0/0	t0017	3134	1	1	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0018	3134	1	0	0	1	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0019	3134	1	1	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0020	3134	1	1	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0021	3134	1	1	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0022	3134	1	0	0	0	0	1	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0023	3134	1	0	0	1	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0024	3134	1	0	0	1	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0025	3134	1	0	0	1	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0026	3134	1	0	0	1	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0027	3121	1	0	0	0	0	1	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0028	3134	1	0	0	1	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0029	3134	1	0	0	1	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0030	3134	1	1	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0031	3134	1	0	1	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0032	3134	1	0	0	0	0	1	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/1	t0033	3134	1	0	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0034	3134	1	1	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0035	3134	1	0	0	1	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0036	3134	1	1	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0037	3134	1	1	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0038	3134	1	1	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	t0039	3134	1	1	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPSTR1_chr16_9086644_9126635	0/0	t0001	5125	91	2	14	56	7	12	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0002	5126	36	0	11	23	2	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0003	5127	35	0	6	27	0	2	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0004	5123	22	1	9	1	2	9	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0005	5126	20	2	1	11	0	6	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0006	5125	20	20	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0007	5125	12	12	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0008	5126	11	0	1	10	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0009	5127	11	10	1	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0010	5126	8	1	4	0	2	1	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0011	5126	8	0	0	8	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0012	5126	7	0	0	7	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0013	5126	6	4	2	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0014	5127	6	0	0	5	1	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0015	5126	6	0	4	2	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0016	5126	5	5	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0017	5119	4	4	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0018	5127	3	2	1	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0019	5128	3	0	1	2	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0020	5127	3	3	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0021	5124	3	0	1	1	0	1	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0022	5127	3	0	0	2	1	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0023	5125	2	2	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0024	5125	2	2	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0025	5124	2	0	0	2	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0026	5126	2	0	0	2	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0027	5125	2	0	0	0	1	1	copy fasta	HAPSTR1	chr16	9086644	9126635