JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HAPSTR1_chr16_9086644_9126635	0/0	t0078	5126	1	1	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0079	5125	1	1	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0080	5125	1	1	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0081	5126	1	1	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0082	5126	1	0	0	0	0	1	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0083	5126	1	0	0	0	0	1	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0084	5127	1	1	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0085	5125	1	0	0	0	0	1	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	t0086	5120	1	1	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR2_chrX_140086678_140097911	1/1	t0001	413	309	71	57	139	12	28	copy fasta	HAPSTR2	chrX	140086678	140097911
HAPSTR2_chrX_140086678_140097911	0/0	t0002	413	1	1	0	0	0	0	copy fasta	HAPSTR2	chrX	140086678	140097911
HAPSTR2_chrX_140086678_140097911	0/0	t0003	413	1	1	0	0	0	0	copy fasta	HAPSTR2	chrX	140086678	140097911
HAPSTR2_chrX_140086678_140097911	0/0	t0004	413	1	0	0	1	0	0	copy fasta	HAPSTR2	chrX	140086678	140097911
HARBI1_chr11_46597861_46622227	1/1	t0001	918	229	68	47	70	8	34	copy fasta	HARBI1	chr11	46597861	46622227
HARBI1_chr11_46597861_46622227	0/0	t0002	918	20	19	1	0	0	0	copy fasta	HARBI1	chr11	46597861	46622227
HARBI1_chr11_46597861_46622227	0/0	t0003	918	4	4	0	0	0	0	copy fasta	HARBI1	chr11	46597861	46622227
HARBI1_chr11_46597861_46622227	0/0	t0004	918	1	1	0	0	0	0	copy fasta	HARBI1	chr11	46597861	46622227
HARBI1_chr11_46597861_46622227	0/0	t0005	918	1	0	0	1	0	0	copy fasta	HARBI1	chr11	46597861	46622227
HARBI1_chr11_46597861_46622227	0/0	t0006	918	1	1	0	0	0	0	copy fasta	HARBI1	chr11	46597861	46622227
HARBI1_chr11_46597861_46622227	0/0	t0007	906	1	0	0	1	0	0	copy fasta	HARBI1	chr11	46597861	46622227
HARBI1_chr11_46597861_46622227	0/0	t0008	918	1	1	0	0	0	0	copy fasta	HARBI1	chr11	46597861	46622227
HARS1_chr5_140668905_140696370	1/1	t0001	419	376	87	56	179	15	37	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	t0002	419	2	2	0	0	0	0	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	t0003	419	2	2	0	0	0	0	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	t0004	419	1	0	0	0	0	1	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	t0005	419	1	0	0	1	0	0	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	t0006	419	1	0	0	0	1	0	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	t0007	419	1	1	0	0	0	0	copy fasta	HARS1	chr5	140668905	140696370
HARS2_chr5_140686455_140704305	1/1	t0001	948	376	93	54	178	16	33	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	t0002	948	3	3	0	0	0	0	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	t0003	948	2	2	0	0	0	0	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	t0004	948	1	0	0	1	0	0	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	t0005	948	1	0	0	0	0	1	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	t0006	948	1	0	0	1	0	0	copy fasta	HARS2	chr5	140686455	140704305
HAS1_chr19_51708112_51728991	1/0	t0001	374	149	37	37	45	6	23	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/1	t0002	375	119	28	31	29	8	22	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	t0003	375	109	9	10	83	2	5	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	t0004	374	55	14	2	39	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	t0005	375	19	3	0	16	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	t0006	374	7	6	1	0	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	t0007	374	2	1	1	0	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	t0008	375	1	0	0	1	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	t0009	375	1	0	0	1	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	t0010	374	1	0	0	1	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	t0011	375	1	0	0	1	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS2_chr8_121607116_121646440	0/1	t0001	2577	91	8	18	54	4	6	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0002	2581	36	1	5	18	3	9	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0003	2581	15	0	4	10	0	1	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0004	2582	15	1	4	6	0	4	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0005	2578	12	1	5	5	0	1	copy fasta	HAS2	chr8	121607116	121646440