JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HAS2_chr8_121607116_121646440	0/0	t0006	2576	9	5	0	3	0	1	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0007	2578	9	0	0	7	1	1	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0008	2582	9	0	5	4	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0009	2579	8	4	3	0	0	1	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0010	2579	6	0	2	3	0	1	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0011	2579	6	3	1	0	1	1	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0012	2575	5	5	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0013	2582	5	0	0	5	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0014	2579	5	0	2	2	0	1	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0015	2582	4	0	0	4	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0016	2582	4	0	3	0	0	1	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0017	2580	4	0	0	1	0	3	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0018	2578	3	3	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0019	2576	3	3	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0020	2579	3	0	0	0	2	1	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0021	2579	3	3	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0022	2581	3	0	1	2	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0023	2578	3	2	1	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0024	2583	3	1	1	1	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0025	2581	3	3	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0026	2577	2	2	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0027	2580	2	0	2	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0028	2578	2	2	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0029	2577	2	2	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0030	2577	2	0	0	1	0	1	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0031	2577	2	0	0	2	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0032	2576	2	0	0	2	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0033	2580	2	0	0	0	1	1	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0034	2580	2	0	1	0	1	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0035	2578	2	2	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0036	2577	2	1	1	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0037	2577	2	0	0	0	0	2	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0038	2578	2	0	0	2	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0039	2583	2	0	0	1	0	1	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0040	2577	2	2	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0041	2583	2	0	0	2	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0042	2582	2	0	2	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0043	2581	2	2	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0044	2579	1	1	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0045	2577	1	1	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0046	2575	1	0	0	1	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0047	2575	1	1	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0048	2579	1	0	0	1	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0049	2579	1	1	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0050	2577	1	0	1	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0051	2577	1	1	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0052	2578	1	0	0	1	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0053	2576	1	0	0	1	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0054	2577	1	1	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0055	2577	1	0	0	0	0	1	copy fasta	HAS2	chr8	121607116	121646440