JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HAS2_chr8_121607116_121646440	0/0	t0106	2584	1	0	0	1	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0107	2583	1	0	1	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0108	2582	1	1	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0109	2582	1	1	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0110	2582	1	0	1	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0111	2582	1	0	1	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0112	2581	1	1	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0113	2581	1	0	1	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0114	2580	1	1	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	t0115	2580	1	1	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	1/0	t0116	2582	1	0	0	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS3_chr16_69100653_69122660	1/0	t0001	2530	186	39	41	80	6	19	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0002	2529	97	4	17	64	4	8	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/1	t0003	2526	27	5	5	5	2	9	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0004	2527	15	15	0	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0005	2527	13	4	2	5	1	1	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0006	2531	13	1	0	12	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0007	2529	9	0	9	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0008	2527	7	7	0	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0009	2527	7	0	0	2	0	5	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0010	2527	4	1	2	0	1	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0011	2526	4	4	0	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0012	2528	4	0	1	1	0	2	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0013	2527	4	3	1	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0014	2527	3	3	0	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0015	2525	3	3	0	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0016	2529	2	2	0	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0017	2529	2	0	0	2	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0018	2527	2	0	0	2	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0019	2526	1	1	0	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0020	2530	1	0	0	1	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0021	2530	1	0	0	0	0	1	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0022	2526	1	1	0	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0023	2529	1	0	0	0	0	1	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0024	2529	1	0	0	1	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0025	2527	1	1	0	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	t0026	2527	1	0	0	1	0	0	copy fasta	HAS3	chr16	69100653	69122660
HASPIN_chr17_3718903_3731699	1/1	t0001	401	217	34	53	107	8	13	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	t0002	401	110	3	17	59	6	25	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	t0003	401	49	46	3	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	t0004	401	31	3	9	13	4	2	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	t0005	401	2	2	0	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	t0006	401	2	2	0	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	t0007	401	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	t0008	401	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	t0009	401	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HAT1_chr2_171917461_171988686	1/1	t0001	375	326	76	58	140	8	42	copy fasta	HAT1	chr2	171917461	171988686
HAUS1_chr18_46099385_46133333	1/1	t0001	236	360	87	56	154	16	45	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	t0002	236	9	0	8	0	0	1	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	t0003	236	3	3	0	0	0	0	copy fasta	HAUS1	chr18	46099385	46133333