JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HAUS2_chr15_42543838_42574994	0/1	t0001	3213	155	3	30	78	13	30	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	1/0	t0002	3214	80	23	16	33	0	7	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0003	3213	30	13	10	1	2	4	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0004	3207	19	16	3	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0005	3214	11	8	2	0	1	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0006	3210	7	7	0	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0007	3212	4	0	0	4	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0008	3213	4	0	0	4	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0009	3214	4	4	0	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0010	3213	4	3	0	1	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0011	3215	3	0	1	2	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0012	3213	2	0	0	2	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0013	3214	2	0	1	1	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0014	3213	2	0	0	2	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0015	3213	2	2	0	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0016	3213	2	0	1	0	1	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0017	3213	2	2	0	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0018	3213	2	2	0	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0019	3213	2	2	0	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0020	3213	2	0	0	0	0	2	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0021	3213	1	0	0	1	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0022	3213	1	0	0	0	1	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0023	3214	1	0	1	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0024	3213	1	0	1	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0025	3213	1	0	0	0	0	1	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0026	3213	1	1	0	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0027	3213	1	1	0	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0028	3213	1	0	1	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0029	3213	1	0	1	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0030	3214	1	1	0	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	t0031	3213	1	0	0	1	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS3_chr4_2223349_2247121	1/1	t0001	4068	146	31	27	68	5	13	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0002	4068	78	29	11	36	0	2	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0003	4068	19	3	6	8	1	1	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0004	4068	15	0	5	7	1	2	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0005	4069	13	2	2	6	1	2	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0006	4068	10	0	0	10	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0007	4069	6	1	1	4	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0008	4064	5	5	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0009	4068	3	0	0	3	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0010	4061	3	3	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0011	4060	2	2	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0012	4069	2	1	1	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0013	4068	2	2	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0014	4068	2	0	2	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0015	4068	2	0	0	0	2	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0016	4068	2	0	2	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0017	4064	2	2	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0018	4067	1	1	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0019	4067	1	1	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121