JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HAUS3_chr4_2223349_2247121	0/0	t0020	4060	1	1	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0021	4068	1	0	0	1	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0022	4068	1	1	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0023	4068	1	1	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0024	4068	1	0	0	1	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0025	4069	1	0	0	1	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0026	4068	1	0	0	1	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0027	4068	1	0	1	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0028	4068	1	1	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0029	4068	1	0	0	1	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0030	4068	1	0	0	1	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0031	4068	1	1	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0032	4068	1	1	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0033	4068	1	1	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0034	4064	1	1	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	t0035	4068	1	1	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS4_chr14_22941228_22962090	1/0	t0001	495	146	61	26	34	9	15	copy fasta	HAUS4	chr14	22941228	22962090
HAUS4_chr14_22941228_22962090	0/0	t0002	495	140	6	36	66	5	27	copy fasta	HAUS4	chr14	22941228	22962090
HAUS4_chr14_22941228_22962090	0/0	t0003	492	21	19	2	0	0	0	copy fasta	HAUS4	chr14	22941228	22962090
HAUS4_chr14_22941228_22962090	0/0	t0004	495	8	8	0	0	0	0	copy fasta	HAUS4	chr14	22941228	22962090
HAUS4_chr14_22941228_22962090	0/0	t0005	495	1	1	0	0	0	0	copy fasta	HAUS4	chr14	22941228	22962090
HAUS4_chr14_22941228_22962090	0/0	t0006	495	1	1	0	0	0	0	copy fasta	HAUS4	chr14	22941228	22962090
HAUS5_chr19_35607735_35630355	0/1	t0001	2431	215	34	38	117	7	18	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	1/0	t0002	2423	74	12	13	35	4	9	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0003	2432	30	11	6	10	1	2	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0004	2427	14	0	0	13	0	1	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0005	2430	13	3	2	8	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0006	2424	11	1	1	6	0	3	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0007	2431	9	1	8	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0008	2429	8	0	7	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0009	2429	7	7	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0010	2431	6	6	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0011	2423	5	0	2	0	0	3	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0012	2431	5	4	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0013	2430	4	3	1	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0014	2431	4	4	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0015	2423	3	0	2	0	0	1	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0016	2430	3	3	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0017	2431	2	2	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0018	2423	2	0	0	0	0	2	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0019	2432	2	2	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0020	2431	1	0	1	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0021	2429	1	1	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0022	2430	1	1	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0023	2431	1	0	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0024	2425	1	0	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0025	2431	1	0	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0026	2429	1	1	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0027	2429	1	1	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0028	2423	1	1	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355