JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HAUS5_chr19_35607735_35630355	0/0	t0029	2430	1	1	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0030	2423	1	0	1	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0031	2429	1	1	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	t0032	2431	1	0	0	0	0	1	copy fasta	HAUS5	chr19	35607735	35630355
HAUS6_chr9_19048141_19107904	0/0	t0001	3456	122	13	25	57	5	22	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	1/0	t0002	3456	111	6	17	77	3	7	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0003	3457	62	25	14	11	5	7	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0004	3456	29	20	1	4	0	4	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0005	3456	29	0	5	22	0	2	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/1	t0006	3456	8	1	2	0	2	2	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0007	3457	7	7	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0008	3456	4	4	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0009	3456	3	0	2	0	1	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0010	3457	3	3	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0011	3457	3	3	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0012	3456	2	0	0	2	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0013	3456	2	2	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0014	3456	2	2	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0015	3456	2	2	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0016	3456	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0017	3456	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0018	3456	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0019	3456	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0020	3456	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0021	3456	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0022	3456	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0023	3456	1	0	0	0	0	1	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0024	3457	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0025	3457	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0026	3457	1	0	0	0	0	1	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0027	3457	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0028	3456	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0029	3456	1	0	0	0	0	1	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0030	3456	1	0	0	0	0	1	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0031	3456	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	t0032	3456	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS7_chrX_153442668_153475576	1/1	t0001	230	317	78	52	144	10	31	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	t0002	230	1	0	0	0	0	1	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	t0003	232	1	0	0	0	1	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	t0004	231	1	0	0	1	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	t0005	230	1	0	0	1	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS8_chr19_17044729_17080452	1/0	t0001	175	295	46	43	159	9	37	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/1	t0002	175	101	42	31	15	5	7	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	t0003	175	2	2	0	0	0	0	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	t0004	169	1	0	0	1	0	0	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	t0005	175	1	0	0	1	0	0	copy fasta	HAUS8	chr19	17044729	17080452
HAVCR1_chr5_157024413_157064116	0/1	t0001	529	302	74	49	129	12	37	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	1/0	t0002	529	37	8	13	8	6	1	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	t0003	529	5	2	3	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	t0004	529	3	3	0	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116