JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HAVCR1_chr5_157024413_157064116	0/0	t0005	529	2	2	0	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	t0006	529	1	1	0	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	t0007	529	1	0	1	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	t0008	529	1	0	0	1	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR2_chr5_157080832_157114044	0/1	t0001	1332	310	66	52	150	8	33	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	1/0	t0002	1332	38	14	11	6	4	2	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	t0003	1340	12	9	3	0	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	t0004	1332	7	7	0	0	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	t0005	1332	4	0	0	4	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	t0006	1332	2	0	0	1	0	1	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	t0007	1332	1	0	0	1	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	t0008	1332	1	0	0	1	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	t0009	1332	1	0	0	1	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	t0010	1332	1	0	0	1	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	t0011	1332	1	0	0	1	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	t0012	1332	1	1	0	0	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	t0013	1332	1	1	0	0	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAX1_chr1_154267629_154280875	1/1	t0001	270	278	92	56	92	7	29	copy fasta	HAX1	chr1	154267629	154280875
HAX1_chr1_154267629_154280875	0/0	t0002	270	111	1	16	78	3	13	copy fasta	HAX1	chr1	154267629	154280875
HAX1_chr1_154267629_154280875	0/0	t0003	270	2	0	0	0	0	2	copy fasta	HAX1	chr1	154267629	154280875
HAX1_chr1_154267629_154280875	0/0	t0004	270	1	1	0	0	0	0	copy fasta	HAX1	chr1	154267629	154280875
HBA1_chr16_171680_182522	1/1	t0001	149	395	94	65	185	14	35	copy fasta	HBA1	chr16	171680	182522
HBA1_chr16_171680_182522	0/0	t0002	149	1	0	1	0	0	0	copy fasta	HBA1	chr16	171680	182522
HBA1_chr16_171680_182522	0/0	t0003	149	1	0	0	0	0	1	copy fasta	HBA1	chr16	171680	182522
HBA1_chr16_171680_182522	0/0	t0004	32	1	0	0	1	0	0	copy fasta	HBA1	chr16	171680	182522
HBA2_chr16_167876_178710	0/0	t0000	0	15	10	2	1	0	2	copy fasta	HBA2	chr16	167876	178710
HBA2_chr16_167876_178710	0/1	t0001	148	363	78	61	178	11	34	copy fasta	HBA2	chr16	167876	178710
HBA2_chr16_167876_178710	0/0	t0002	148	5	0	3	0	0	2	copy fasta	HBA2	chr16	167876	178710
HBA2_chr16_167876_178710	1/0	t0003	148	2	0	0	0	1	0	copy fasta	HBA2	chr16	167876	178710
HBA2_chr16_167876_178710	0/0	t0004	117	1	0	0	1	0	0	copy fasta	HBA2	chr16	167876	178710
HBB_chr11_5220464_5232071	1/1	t0001	185	487	100	88	231	18	48	copy fasta	HBB	chr11	5220464	5232071
HBB_chr11_5220464_5232071	0/0	t0002	185	1	0	0	1	0	0	copy fasta	HBB	chr11	5220464	5232071
HBD_chr11_5227838_5239483	1/1	t0001	177	460	100	86	208	14	50	copy fasta	HBD	chr11	5227838	5239483
HBE1_chr11_5263345_5274945	1/1	t0001	180	390	75	77	178	12	46	copy fasta	HBE1	chr11	5263345	5274945
HBE1_chr11_5263345_5274945	0/0	t0002	180	25	22	3	0	0	0	copy fasta	HBE1	chr11	5263345	5274945
HBE1_chr11_5263345_5274945	0/0	t0003	180	1	1	0	0	0	0	copy fasta	HBE1	chr11	5263345	5274945
HBEGF_chr5_140327843_140351603	0/0	t0001	1732	175	46	24	82	5	18	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/0	t0002	1732	112	6	12	78	6	10	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	1/0	t0003	1732	84	13	19	34	5	12	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/0	t0004	1729	19	17	0	1	0	1	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/0	t0005	1732	16	10	4	0	2	0	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/0	t0006	1732	5	3	2	0	0	0	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/0	t0007	1732	3	0	3	0	0	0	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/0	t0008	1729	2	0	0	0	0	2	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/0	t0009	1732	2	1	1	0	0	0	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/0	t0010	1732	2	0	2	0	0	0	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/0	t0011	1732	1	0	1	0	0	0	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/0	t0012	1732	1	0	1	0	0	0	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/0	t0013	1732	1	0	0	1	0	0	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/0	t0014	1732	1	1	0	0	0	0	copy fasta	HBEGF	chr5	140327843	140351603