JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HBEGF_chr5_140327843_140351603	0/0	t0015	1732	1	0	0	0	0	1	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/1	t0016	1732	1	0	0	0	0	0	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/0	t0017	1732	1	0	1	0	0	0	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/0	t0018	1732	1	1	0	0	0	0	copy fasta	HBEGF	chr5	140327843	140351603
HBG1_chr11_5243269_5254857	0/0	t0001	144	196	68	36	71	5	16	copy fasta	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	0/0	t0002	143	87	2	8	67	3	7	copy fasta	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	0/0	t0003	144	85	17	18	30	5	15	copy fasta	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	1/0	t0004	144	56	5	11	31	0	8	copy fasta	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	0/0	t0005	91	3	0	2	1	0	0	copy fasta	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	0/0	t0006	144	2	2	0	0	0	0	copy fasta	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	0/0	t0007	144	2	0	1	0	1	0	copy fasta	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	0/0	t0008	143	1	0	0	1	0	0	copy fasta	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	0/0	t0009	91	1	0	0	1	0	0	copy fasta	HBG1	chr11	5243269	5254857
HBG2_chr11_5248188_5259781	1/0	t0001	143	329	64	54	171	9	30	copy fasta	HBG2	chr11	5248188	5259781
HBG2_chr11_5248188_5259781	0/1	t0002	144	98	30	18	30	5	14	copy fasta	HBG2	chr11	5248188	5259781
HBG2_chr11_5248188_5259781	0/0	t0003	54	3	0	2	1	0	0	copy fasta	HBG2	chr11	5248188	5259781
HBM_chr16_160978_171764	1/1	t0001	77	357	86	63	158	14	34	copy fasta	HBM	chr16	160978	171764
HBM_chr16_160978_171764	0/0	t0002	77	13	0	1	12	0	0	copy fasta	HBM	chr16	160978	171764
HBP1_chr7_107164003_107207522	1/1	t0001	1290	315	75	54	142	11	31	copy fasta	HBP1	chr7	107164003	107207522
HBP1_chr7_107164003_107207522	0/0	t0002	1294	46	2	12	20	3	9	copy fasta	HBP1	chr7	107164003	107207522
HBP1_chr7_107164003_107207522	0/0	t0003	1290	3	3	0	0	0	0	copy fasta	HBP1	chr7	107164003	107207522
HBP1_chr7_107164003_107207522	0/0	t0004	1290	2	2	0	0	0	0	copy fasta	HBP1	chr7	107164003	107207522
HBP1_chr7_107164003_107207522	0/0	t0005	1290	1	1	0	0	0	0	copy fasta	HBP1	chr7	107164003	107207522
HBP1_chr7_107164003_107207522	0/0	t0006	1290	1	1	0	0	0	0	copy fasta	HBP1	chr7	107164003	107207522
HBQ1_chr16_175459_186179	1/1	t0001	100	292	62	53	135	13	27	copy fasta	HBQ1	chr16	175459	186179
HBQ1_chr16_175459_186179	0/0	t0002	100	84	26	12	39	0	7	copy fasta	HBQ1	chr16	175459	186179
HBQ1_chr16_175459_186179	0/0	t0003	100	7	3	1	0	1	2	copy fasta	HBQ1	chr16	175459	186179
HBQ1_chr16_175459_186179	0/0	t0004	72	1	1	0	0	0	0	copy fasta	HBQ1	chr16	175459	186179
HBS1L_chr6_134955378_135059822	0/1	t0001	5034	88	15	14	44	4	10	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0002	5029	63	1	9	43	0	10	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0003	5035	38	4	9	16	6	3	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0004	5034	18	1	3	12	1	1	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	1/0	t0005	5033	13	1	6	3	2	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0006	5034	10	10	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0007	5035	6	2	0	3	0	1	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0008	5036	6	4	0	2	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0009	5031	6	6	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0010	5034	5	0	3	0	0	2	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0011	5032	5	3	2	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0012	5030	5	0	3	1	0	1	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0013	5034	4	4	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0014	5029	4	2	2	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0015	5036	4	0	0	3	0	1	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0016	5033	4	0	2	0	1	1	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0017	5033	3	3	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0018	5036	3	0	2	0	0	1	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0019	5033	3	3	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0020	5034	2	0	1	0	1	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0021	5034	2	0	0	2	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0022	5035	2	0	0	2	0	0	copy fasta	HBS1L	chr6	134955378	135059822