JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HBS1L_chr6_134955378_135059822	0/0	t0023	5034	2	0	0	2	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0024	5030	2	2	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0025	5035	2	2	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0026	5032	2	2	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0027	5029	2	2	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0028	5029	2	2	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0029	5036	2	1	0	1	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0030	5036	2	0	0	0	0	2	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0031	5036	2	2	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0032	5032	2	2	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0033	5035	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0034	5029	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0035	5029	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0036	5034	1	0	1	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0037	5030	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0038	5029	1	0	0	0	0	1	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0039	5032	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0040	5034	1	0	0	0	1	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0041	5033	1	0	0	0	0	1	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0042	5033	1	0	0	0	0	1	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0043	5034	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0044	5034	1	0	1	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0045	5034	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0046	5034	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0047	5029	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0048	5031	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0049	5059	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0050	5035	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0051	5034	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0052	5035	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0053	5035	1	0	1	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0054	5034	1	0	0	1	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0055	5033	1	0	0	0	0	1	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0056	5036	1	0	0	1	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0057	5035	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0058	5034	1	0	1	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0059	5035	1	0	0	1	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0060	5036	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0061	5037	1	0	1	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0062	5036	1	0	0	1	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0063	5035	1	0	1	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0064	5034	1	0	0	1	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0065	5034	1	0	0	1	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	t0066	5030	1	0	0	0	0	1	copy fasta	HBS1L	chr6	134955378	135059822
HBZ_chr16_147644_159503	0/0	t0001	370	383	69	69	184	16	45	copy fasta	HBZ	chr16	147644	159503
HBZ_chr16_147644_159503	0/0	t0002	370	18	6	2	10	0	0	copy fasta	HBZ	chr16	147644	159503
HBZ_chr16_147644_159503	0/0	t0003	370	16	15	1	0	0	0	copy fasta	HBZ	chr16	147644	159503
HBZ_chr16_147644_159503	0/0	t0004	370	11	0	9	2	0	0	copy fasta	HBZ	chr16	147644	159503
HBZ_chr16_147644_159503	0/0	t0005	267	2	0	1	0	0	1	copy fasta	HBZ	chr16	147644	159503
HBZ_chr16_147644_159503	0/0	t0006	370	2	2	0	0	0	0	copy fasta	HBZ	chr16	147644	159503