JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HCAR1_chr12_122721076_122735844	0/0	t0001	3730	77	9	12	45	3	8	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0002	3731	52	1	20	28	1	2	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0003	3731	45	0	2	38	4	1	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	1/0	t0004	3729	41	0	2	32	2	4	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0005	3730	27	1	15	0	4	7	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0006	3731	14	0	0	14	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0007	3731	13	12	1	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0008	3730	12	1	5	5	0	1	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/1	t0009	3731	11	3	3	4	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0010	3729	10	2	5	3	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0011	3730	10	1	3	3	0	3	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0012	3733	8	8	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0013	3731	8	8	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0014	3728	7	0	0	4	0	3	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0015	3729	6	0	1	1	0	4	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0016	3732	5	1	0	0	0	4	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0017	3731	5	0	0	5	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0018	3730	4	4	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0019	3731	4	0	0	4	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0020	3731	3	3	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0021	3734	3	3	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0022	3729	3	0	0	3	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0023	3731	3	2	0	1	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0024	3731	3	3	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0025	3730	3	3	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0026	3729	3	0	1	1	0	1	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0027	3730	3	0	1	0	2	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0028	3733	2	2	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0029	3730	2	0	0	2	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0030	3730	2	2	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0031	3734	2	2	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0032	3732	2	0	0	2	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0033	3731	2	2	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0034	3729	2	2	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0035	3731	1	0	1	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0036	3731	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0037	3732	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0038	3733	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0039	3730	1	0	0	1	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0040	3730	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0041	3730	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0042	3730	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0043	3734	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0044	3729	1	0	1	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0045	3733	1	0	0	0	0	1	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0046	3726	1	0	0	0	0	1	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0047	3730	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0048	3730	1	0	0	0	1	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0049	3731	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0050	3730	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844