JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HCAR1_chr12_122721076_122735844	0/0	t0051	3730	1	0	0	0	1	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0052	3729	1	0	1	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0053	3729	1	0	1	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0054	3729	1	0	0	1	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0055	3730	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0056	3729	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0057	3732	1	0	0	1	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0058	3729	1	0	0	0	0	1	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0059	3731	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0060	3730	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0061	3731	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0062	3724	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0063	3724	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0064	3731	1	0	0	1	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0065	3731	1	0	0	1	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0066	3730	1	0	0	1	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0067	3728	1	0	0	1	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0068	3730	1	0	0	1	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0069	3729	1	0	0	0	0	1	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0070	3731	1	0	0	1	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0071	3730	1	0	1	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0072	3730	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	t0073	3730	1	1	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR2_chr12_122696293_122708357	1/0	t0001	974	238	46	52	92	13	34	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/1	t0002	974	151	30	24	87	5	4	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	t0003	974	8	8	0	0	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	t0004	974	5	5	0	0	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	t0005	974	5	0	0	5	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	t0006	974	5	0	0	5	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	t0007	972	4	0	3	1	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	t0008	974	2	2	0	0	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	t0009	974	2	2	0	0	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	t0010	974	2	0	0	2	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	t0011	974	1	0	0	1	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	t0012	974	1	0	0	1	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	t0013	974	1	0	0	0	0	1	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	t0014	974	1	0	1	0	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	t0015	974	1	0	0	0	0	1	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	t0016	974	1	1	0	0	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR3_chr12_122709756_122721811	1/0	t0001	893	168	13	33	90	6	25	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/1	t0002	893	145	26	21	89	4	4	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0003	893	44	17	11	3	7	6	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0004	893	26	20	1	0	0	5	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0005	893	10	0	0	10	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0006	893	4	0	3	0	0	1	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0007	893	4	4	0	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0008	893	4	3	0	0	1	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0009	893	3	0	0	1	0	2	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0010	893	3	3	0	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0011	893	2	0	2	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811