JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HCAR3_chr12_122709756_122721811	0/0	t0012	893	2	2	0	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0013	893	2	1	1	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0014	893	1	0	0	1	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0015	893	1	1	0	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0016	893	1	1	0	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0017	893	1	0	0	0	0	1	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0018	893	1	0	0	1	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0019	893	1	0	0	1	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	t0020	893	1	1	0	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCCS_chrX_11106332_11128086	0/0	t0001	1509	96	44	12	27	4	9	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	1/1	t0002	1506	77	12	11	37	4	11	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0003	1510	16	0	6	10	0	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0004	1509	12	0	0	11	0	1	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0005	1506	12	0	0	11	1	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0006	1512	6	6	0	0	0	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0007	1515	2	1	0	1	0	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0008	1512	2	2	0	0	0	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0009	1503	2	0	1	1	0	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0010	1508	1	0	0	1	0	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0011	1469	1	0	0	1	0	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0012	1509	1	0	1	0	0	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0013	1509	1	0	0	1	0	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0014	1509	1	0	0	1	0	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0015	1508	1	0	0	1	0	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0016	1506	1	1	0	0	0	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0017	1507	1	0	0	1	0	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0018	1507	1	0	0	1	0	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0019	1506	1	0	1	0	0	0	copy fasta	HCCS	chrX	11106332	11128086
HCCS_chrX_11106332_11128086	0/0	t0020	1507	1	0	0	0	0	1	copy fasta	HCCS	chrX	11106332	11128086
HCFC1R1_chr16_3017625_3028942	1/1	t0001	239	409	93	78	180	16	40	copy fasta	HCFC1R1	chr16	3017625	3028942
HCFC1R1_chr16_3017625_3028942	0/0	t0002	239	3	3	0	0	0	0	copy fasta	HCFC1R1	chr16	3017625	3028942
HCFC1_chrX_153942557_153976818	1/1	t0001	2769	112	35	20	35	7	13	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0002	2773	105	8	19	67	0	11	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0003	2769	11	9	2	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0004	2769	8	8	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0005	2769	6	6	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0006	2764	5	3	0	2	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0007	2769	4	3	1	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0008	2773	3	0	0	3	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0009	2769	2	2	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0010	2769	2	1	1	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0011	2773	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0012	2769	1	0	1	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0013	2770	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0014	2771	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0015	2768	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0016	2770	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0017	2764	1	1	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0018	2773	1	0	0	0	0	1	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	t0019	2773	1	0	0	0	0	1	copy fasta	HCFC1	chrX	153942557	153976818