JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HCFC1_chrX_153942557_153976818	0/0	t0020	2776	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC2_chr12_104059531_104111524	1/0	t0001	3282	154	54	45	32	8	14	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0002	3282	58	1	4	47	0	6	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0003	3282	56	13	3	35	1	4	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0004	3283	52	14	7	22	3	6	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0005	3282	11	0	0	11	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0006	3283	11	0	3	8	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/1	t0007	3284	8	0	1	0	2	4	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0008	3284	5	1	0	2	0	2	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0009	3282	5	5	0	0	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0010	3281	4	2	0	2	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0011	3282	4	0	0	4	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0012	3281	3	0	0	3	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0013	3282	2	0	0	0	0	2	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0014	3283	1	1	0	0	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0015	3285	1	0	0	0	0	1	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0016	3282	1	0	0	1	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0017	3283	1	0	0	1	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0018	3282	1	1	0	0	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0019	3281	1	0	0	0	0	1	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0020	3283	1	1	0	0	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0021	3284	1	1	0	0	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	t0022	3282	1	0	1	0	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCK_chr20_32047242_32106856	1/1	t0001	521	290	94	66	82	14	32	copy fasta	HCK	chr20	32047242	32106856
HCLS1_chr3_121626399_121665903	1/0	t0001	532	108	37	20	30	4	16	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	t0002	534	105	9	15	67	6	8	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	t0003	534	70	8	14	42	0	6	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/1	t0004	534	59	17	14	18	4	5	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	t0005	534	34	13	2	12	0	7	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	t0006	534	4	3	1	0	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	t0007	534	3	0	0	3	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	t0008	534	2	2	0	0	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	t0009	532	2	0	0	2	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	t0010	534	2	2	0	0	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	t0011	534	1	1	0	0	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCN1_chr5_45249948_45701380	1/0	t0001	7261	66	14	16	29	1	5	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0002	7260	57	13	11	21	4	8	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0003	7261	30	1	13	12	1	3	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0004	7260	15	0	0	15	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0005	7258	11	10	1	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0006	7557	3	2	1	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0007	7262	3	2	0	1	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0008	7261	3	3	0	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0009	7264	2	0	0	0	1	1	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0010	7261	2	0	0	2	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0011	7261	2	0	0	2	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0012	7261	2	2	0	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0013	7261	2	0	0	2	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0014	7261	2	1	1	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0015	7260	1	0	0	1	0	0	copy fasta	HCN1	chr5	45249948	45701380