JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HCN1_chr5_45249948_45701380	0/0	t0016	7260	1	1	0	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0017	7261	1	1	0	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0018	7261	1	0	0	1	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0019	7262	1	1	0	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0020	7260	1	0	0	0	1	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0021	7261	1	0	0	1	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0022	7261	1	1	0	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0023	7556	1	1	0	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0024	7555	1	1	0	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0025	7554	1	0	1	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0026	7553	1	1	0	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0027	7260	1	0	0	1	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0028	7261	1	0	0	1	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0029	7260	1	0	0	1	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/1	t0030	7261	1	0	0	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0031	7576	1	0	1	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0032	7575	1	0	1	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0033	7261	1	1	0	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0034	7261	1	0	1	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0035	7260	1	1	0	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0036	7261	1	0	0	1	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0037	7260	1	0	1	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0038	7261	1	0	0	0	0	1	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0039	7260	1	1	0	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	t0040	7260	1	0	0	1	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN2_chr19_584881_622159	1/0	t0001	751	165	24	46	71	7	16	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0002	751	68	15	9	31	1	12	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0003	751	60	2	13	39	0	6	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/1	t0004	751	57	36	5	12	1	2	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0005	750	12	0	6	1	1	4	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0006	751	9	9	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0007	751	5	0	1	0	1	3	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0008	751	5	5	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0009	751	4	0	0	3	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0010	751	3	0	2	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0011	750	3	3	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0012	751	2	1	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0013	751	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0014	750	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0015	750	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0016	751	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0017	751	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0018	751	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0019	751	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0020	751	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0021	750	1	0	0	0	1	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0022	751	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0023	751	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0024	750	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0025	751	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159