JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HCN2_chr19_584881_622159	0/0	t0026	750	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	t0027	751	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN3_chr1_155272463_155294848	0/0	t0001	1514	152	42	12	74	5	19	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	t0002	1514	129	12	32	55	7	23	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	t0003	1514	13	0	10	3	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	t0004	1514	13	13	0	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/1	t0005	1514	11	6	2	1	1	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	t0006	1514	8	8	0	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	t0007	1514	6	6	0	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	t0008	1514	2	0	1	0	1	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	t0009	1514	1	1	0	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	t0010	1514	1	1	0	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	t0011	1514	1	1	0	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	t0012	1514	1	0	0	1	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	t0013	1514	1	0	1	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN4_chr15_73314859_73373958	0/0	t0001	3311	104	15	27	40	4	18	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0002	3308	88	4	13	53	4	14	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	1/0	t0003	3311	63	35	6	17	0	4	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0004	3311	26	20	5	0	0	1	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/1	t0005	3311	11	1	9	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0006	3311	10	6	0	4	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0007	3311	8	4	0	4	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0008	3311	3	0	0	0	1	2	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0009	3311	3	0	2	0	1	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0010	3311	3	3	0	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0011	3308	3	0	3	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0012	3308	2	0	2	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0013	3301	2	0	0	0	2	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0014	3311	2	1	1	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0015	3308	2	0	0	2	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0016	3308	1	0	1	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0017	3311	1	0	1	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0018	3311	1	1	0	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0019	3308	1	0	0	1	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0020	3311	1	0	0	0	0	1	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0021	3311	1	1	0	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0022	3311	1	0	0	0	0	1	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0023	3311	1	1	0	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0024	3311	1	0	0	1	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0025	3311	1	0	0	1	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0026	3308	1	0	0	0	0	1	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0027	3308	1	0	0	1	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0028	3308	1	0	0	1	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	t0029	3308	1	0	0	1	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCRTR1_chr1_31612689_31632613	1/0	t0001	1030	172	46	27	77	5	16	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/1	t0002	1033	114	7	27	51	7	21	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	t0003	1030	24	15	4	0	0	5	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	t0004	1030	6	1	0	5	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	t0005	1030	6	6	0	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	t0006	1030	3	0	0	3	0	0	copy fasta	HCRTR1	chr1	31612689	31632613