Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANAPC1_chr2_111762640_111889193	1/0	t0001	1928	102	17	19	48	6	11	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0002	1929	73	14	14	39	1	5	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0003	1928	59	19	12	19	2	7	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/1	t0004	1929	48	8	13	18	1	7	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0005	1928	29	0	10	11	4	4	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0006	1929	26	8	0	18	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0007	1929	13	12	1	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0008	1929	6	6	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0009	1929	4	0	0	4	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0010	1928	1	1	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0011	1928	1	0	1	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0012	1928	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0013	1929	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0014	1928	1	1	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0015	1929	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0016	1928	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0017	1928	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0018	1929	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	t0019	1929	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC2_chr9_137169784_137193560	1/1	t0001	187	379	95	72	157	16	37	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	t0002	183	14	1	0	6	0	7	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	t0003	195	10	0	0	10	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	t0004	187	7	0	0	7	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	t0005	187	2	0	2	0	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	t0006	171	1	0	0	1	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	t0007	175	1	0	0	1	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	t0008	183	1	0	0	0	0	1	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	t0009	183	1	0	0	0	0	1	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC4_chr4_25372263_25423498	1/1	t0001	209	454	100	83	207	14	48	copy fasta	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	t0002	209	1	0	0	1	0	0	copy fasta	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	t0003	209	1	0	1	0	0	0	copy fasta	ANAPC4	chr4	25372263	25423498
ANAPC5_chr12_121303245_121357411	1/1	t0001	307	272	83	55	98	6	28	copy fasta	ANAPC5	chr12	121303245	121357411
ANAPC5_chr12_121303245_121357411	0/0	t0002	307	5	4	1	0	0	0	copy fasta	ANAPC5	chr12	121303245	121357411
ANAPC5_chr12_121303245_121357411	0/0	t0003	307	1	1	0	0	0	0	copy fasta	ANAPC5	chr12	121303245	121357411
ANAPC7_chr12_110367900_110408708	1/1	t0001	1326	274	74	57	90	17	34	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	t0002	1326	6	6	0	0	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	t0003	1326	5	0	4	0	1	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	t0004	1326	3	3	0	0	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	t0005	1326	2	0	2	0	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	t0006	1326	2	2	0	0	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	t0007	1326	1	0	0	1	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	t0008	1326	1	1	0	0	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	t0009	1326	1	0	0	1	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	t0010	1326	1	0	1	0	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	t0011	1326	1	1	0	0	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	t0012	1326	1	1	0	0	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANGEL1_chr14_76781009_76817882	0/1	t0001	3275	94	18	21	38	3	13	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	1/0	t0002	3275	88	14	22	36	4	11	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0003	3275	64	8	7	43	2	4	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	t0004	3275	41	12	5	18	1	5	copy fasta	ANGEL1	chr14	76781009	76817882