JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HCRTR1_chr1_31612689_31632613	0/0	t0007	1030	3	2	1	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	t0008	1011	2	0	0	2	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	t0009	1033	1	0	0	1	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	t0010	1033	1	0	1	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	t0011	1033	1	0	0	1	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	t0012	1030	1	1	0	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR2_chr6_55169515_55287617	1/1	t0001	237	358	77	74	149	16	40	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	t0002	238	8	8	0	0	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	t0003	237	1	1	0	0	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	t0004	237	1	0	0	1	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRT_chr17_42179060_42190452	1/1	t0001	182	370	89	60	164	16	39	copy fasta	HCRT	chr17	42179060	42190452
HCRT_chr17_42179060_42190452	0/0	t0002	182	6	4	1	0	0	1	copy fasta	HCRT	chr17	42179060	42190452
HCRT_chr17_42179060_42190452	0/0	t0003	182	1	0	1	0	0	0	copy fasta	HCRT	chr17	42179060	42190452
HCRT_chr17_42179060_42190452	0/0	t0004	182	1	1	0	0	0	0	copy fasta	HCRT	chr17	42179060	42190452
HCST_chr19_35897529_35909377	1/1	t0001	283	388	72	80	172	16	46	copy fasta	HCST	chr19	35897529	35909377
HCST_chr19_35897529_35909377	0/0	t0002	284	11	11	0	0	0	0	copy fasta	HCST	chr19	35897529	35909377
HCST_chr19_35897529_35909377	0/0	t0003	283	8	8	0	0	0	0	copy fasta	HCST	chr19	35897529	35909377
HCST_chr19_35897529_35909377	0/0	t0004	272	1	1	0	0	0	0	copy fasta	HCST	chr19	35897529	35909377
HDAC10_chr22_50240183_50256265	0/1	t0001	558	319	94	53	126	11	34	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	1/0	t0002	558	82	3	26	40	5	7	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	t0003	558	33	0	3	27	0	3	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	t0004	558	11	0	0	11	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	t0005	558	1	0	0	0	0	1	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	t0006	558	1	1	0	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	t0007	558	1	0	0	0	0	1	copy fasta	HDAC10	chr22	50240183	50256265
HDAC11_chr3_13475306_13511416	1/1	t0001	1776	269	64	54	98	15	36	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0002	1776	77	17	1	58	1	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0003	1776	42	0	9	31	0	2	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0004	1776	6	5	1	0	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0005	1776	4	0	2	0	0	2	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0006	1776	4	4	0	0	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0007	1776	3	3	0	0	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0008	1776	2	2	0	0	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0009	1776	2	0	0	0	0	2	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0010	1776	1	1	0	0	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0011	1776	1	1	0	0	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0012	1776	1	0	0	1	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0013	1776	1	1	0	0	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0014	1776	1	0	1	0	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0015	1776	1	0	1	0	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0016	1776	1	1	0	0	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0017	1776	1	1	0	0	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0018	1776	1	0	0	1	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0019	1776	1	0	1	0	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	t0020	1776	1	0	0	1	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC1_chr1_32287083_32338626	1/1	t0001	670	142	63	27	28	6	16	copy fasta	HDAC1	chr1	32287083	32338626
HDAC1_chr1_32287083_32338626	0/0	t0002	670	4	3	1	0	0	0	copy fasta	HDAC1	chr1	32287083	32338626
HDAC2_chr6_113928028_113976148	1/0	t0001	8271	92	27	15	38	4	7	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/1	t0002	8264	71	4	7	47	3	9	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0003	8267	54	7	10	35	0	2	copy fasta	HDAC2	chr6	113928028	113976148