JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HDAC2_chr6_113928028_113976148	0/0	t0004	8267	39	4	9	20	1	5	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0005	8271	35	0	17	14	1	3	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0006	8273	21	0	12	7	1	1	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0007	8267	17	0	0	15	0	2	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0008	8264	7	7	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0009	8272	6	2	1	0	0	3	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0010	8267	5	5	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0011	8272	3	2	1	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0012	8267	3	0	0	3	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0013	8272	2	0	0	0	2	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0014	8271	2	2	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0015	8271	2	2	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0016	8264	2	0	0	2	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0017	8270	2	2	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0018	8271	2	2	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0019	8267	2	2	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0020	8266	2	1	1	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0021	8273	1	0	1	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0022	8267	1	0	1	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0023	8267	1	0	0	1	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0024	8267	1	0	1	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0025	8267	1	0	0	1	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0026	8271	1	1	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0027	8271	1	1	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0028	8271	1	0	0	0	0	1	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0029	8271	1	0	0	1	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0030	8271	1	1	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0031	8264	1	1	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0032	8264	1	0	0	1	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0033	8264	1	0	0	1	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0034	8264	1	0	1	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0035	8264	1	0	0	1	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0036	8264	1	0	0	1	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0037	8264	1	0	1	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0038	8267	1	0	0	1	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0039	8267	1	0	0	1	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0040	8267	1	0	0	1	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0041	8264	1	0	1	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0042	8264	1	0	0	0	0	1	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0043	8271	1	1	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0044	8267	1	1	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0045	8267	1	1	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0046	8267	1	1	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0047	8267	1	1	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0048	8270	1	1	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0049	8271	1	0	0	1	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0050	8271	1	0	1	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0051	8264	1	0	0	1	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0052	8267	1	0	0	1	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	t0053	8266	1	1	0	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148