JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HDAC3_chr5_141615881_141641849	1/1	t0001	647	363	88	62	155	14	42	copy fasta	HDAC3	chr5	141615881	141641849
HDAC3_chr5_141615881_141641849	0/0	t0002	647	10	0	2	7	0	1	copy fasta	HDAC3	chr5	141615881	141641849
HDAC3_chr5_141615881_141641849	0/0	t0003	647	6	0	6	0	0	0	copy fasta	HDAC3	chr5	141615881	141641849
HDAC3_chr5_141615881_141641849	0/0	t0004	654	3	2	0	0	0	1	copy fasta	HDAC3	chr5	141615881	141641849
HDAC3_chr5_141615881_141641849	0/0	t0005	647	2	0	0	2	0	0	copy fasta	HDAC3	chr5	141615881	141641849
HDAC3_chr5_141615881_141641849	0/0	t0006	647	1	0	0	1	0	0	copy fasta	HDAC3	chr5	141615881	141641849
HDAC3_chr5_141615881_141641849	0/0	t0007	647	1	1	0	0	0	0	copy fasta	HDAC3	chr5	141615881	141641849
HDAC3_chr5_141615881_141641849	0/0	t0008	647	1	0	0	1	0	0	copy fasta	HDAC3	chr5	141615881	141641849
HDAC3_chr5_141615881_141641849	0/0	t0009	647	1	1	0	0	0	0	copy fasta	HDAC3	chr5	141615881	141641849
HDAC4_chr2_239043168_239406020	1/1	t0001	5192	73	12	14	29	3	13	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0002	5208	16	1	5	6	1	3	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0003	5196	15	11	3	0	1	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0004	5192	13	8	0	5	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0005	5197	10	5	2	0	2	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0006	5192	9	2	0	6	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0007	5197	6	6	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0008	5208	6	2	2	2	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0009	5198	5	0	3	0	1	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0010	5192	4	4	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0011	5193	3	0	0	3	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0012	5192	3	0	2	0	1	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0013	5200	3	0	0	2	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0014	5212	3	0	0	2	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0015	5196	3	1	1	1	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0016	5192	2	0	0	0	0	2	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0017	5205	2	2	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0018	5209	2	0	2	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0019	5192	2	2	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0020	5206	2	0	1	0	1	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0021	5182	2	2	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0022	5184	2	2	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0023	5204	2	0	1	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0024	5196	2	0	1	0	1	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0025	5204	2	0	1	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0026	5192	2	0	0	2	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0027	5208	1	0	0	1	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0028	5192	1	0	0	1	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0029	5190	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0030	5199	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0031	5193	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0032	5185	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0033	5197	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0034	5197	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0035	5201	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0036	5201	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0037	5201	1	0	0	1	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0038	5197	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0039	5193	1	0	1	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0040	5196	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0041	5192	1	0	1	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020