JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HDAC4_chr2_239043168_239406020	0/0	t0042	5190	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0043	5198	1	0	0	0	1	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0044	5198	1	0	1	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0045	5202	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0046	5196	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0047	5192	1	0	1	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0048	5196	1	0	1	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0049	5208	1	0	1	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0050	5192	1	0	0	1	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0051	5184	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0052	5204	1	0	1	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0053	5208	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0054	5208	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0055	5196	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0056	5196	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0057	5216	1	0	1	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0058	5200	1	0	1	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0059	5216	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0060	5208	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0061	5200	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0062	5184	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0063	5192	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0064	5196	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0065	5192	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0066	5208	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0067	5196	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0068	5192	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0069	5192	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0070	5192	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0071	5196	1	0	1	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0072	5192	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0073	5212	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	t0074	5192	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC5_chr17_44071753_44128641	0/0	t0001	1951	137	51	21	60	2	3	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/1	t0002	1951	54	1	16	25	3	8	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0003	1951	45	18	6	12	3	6	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0004	1951	19	2	9	5	2	1	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0005	1951	11	0	3	7	0	1	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0006	1951	5	4	1	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	1/0	t0007	1951	5	3	0	1	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0008	1951	3	2	1	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0009	1951	3	0	1	0	0	2	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0010	1951	2	2	0	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0011	1951	2	2	0	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0012	1951	1	0	0	0	0	1	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0013	1951	1	1	0	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0014	1951	1	1	0	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0015	1951	1	0	0	1	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0016	1951	1	1	0	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0017	1951	1	0	0	1	0	0	copy fasta	HDAC5	chr17	44071753	44128641