JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HDAC5_chr17_44071753_44128641	0/0	t0018	1951	1	0	1	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0019	1951	1	0	0	1	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0020	1951	1	0	1	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	t0021	1951	1	0	0	1	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC6_chrX_48797067_48829976	1/1	t0001	471	269	72	52	106	11	26	copy fasta	HDAC6	chrX	48797067	48829976
HDAC7_chr12_47777722_47824903	0/0	t0001	1238	135	35	29	53	0	18	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	t0002	1238	58	2	1	42	5	8	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	t0003	1236	54	26	7	17	2	2	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	1/1	t0004	1238	53	12	17	12	2	8	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	t0005	1236	28	3	5	13	1	6	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	t0006	1226	19	2	10	0	4	3	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	t0007	1236	8	1	6	0	1	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	t0008	1238	5	5	0	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	t0009	1238	5	5	0	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	t0010	1236	3	1	1	0	1	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	t0011	1238	3	2	1	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	t0012	1238	3	3	0	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	t0013	1238	2	0	1	0	1	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	t0014	1238	2	0	0	0	1	1	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	t0015	1238	1	0	0	1	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	t0016	1238	1	1	0	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC8_chrX_72324516_72577843	0/1	t0001	621	134	51	24	41	3	14	copy fasta	HDAC8	chrX	72324516	72577843
HDAC8_chrX_72324516_72577843	1/0	t0002	621	71	17	5	36	2	10	copy fasta	HDAC8	chrX	72324516	72577843
HDAC8_chrX_72324516_72577843	0/0	t0003	621	1	1	0	0	0	0	copy fasta	HDAC8	chrX	72324516	72577843
HDAC8_chrX_72324516_72577843	0/0	t0004	621	1	1	0	0	0	0	copy fasta	HDAC8	chrX	72324516	72577843
HDAC8_chrX_72324516_72577843	0/0	t0005	622	1	0	0	1	0	0	copy fasta	HDAC8	chrX	72324516	72577843
HDAC9_chr7_18490749_19007416	0/0	t0001	6669	15	12	2	0	0	1	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0002	6671	15	2	2	8	0	3	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0003	6669	15	0	7	6	0	2	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0004	6671	14	3	4	5	0	2	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0005	6670	13	1	2	10	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0006	6673	6	6	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0007	6671	6	6	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0008	6668	6	6	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0009	6669	4	4	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0010	6675	4	3	1	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0011	6672	4	0	2	0	0	2	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0012	6674	2	2	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0013	6668	2	2	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0014	6668	2	2	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0015	6669	2	2	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0016	6672	2	0	0	1	0	1	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0017	6671	2	0	0	0	0	2	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0018	6670	2	2	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0019	6670	2	2	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0020	6671	2	2	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0021	6668	2	2	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0022	6671	1	0	0	1	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0023	6671	1	0	0	1	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0024	6670	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416