JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HDAC9_chr7_18490749_19007416	0/0	t0025	6669	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0026	6669	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0027	6669	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0028	6672	1	0	0	1	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0029	6672	1	0	0	1	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0030	6671	1	0	0	0	0	1	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0031	6674	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0032	6669	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0033	6672	1	0	0	1	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0034	6674	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0035	6673	1	0	1	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0036	6668	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0037	6668	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0038	6668	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0039	6672	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0040	6670	1	0	1	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0041	6670	1	0	0	0	0	1	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0042	6669	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0043	6669	1	0	0	1	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/1	t0044	6669	1	0	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0045	6669	1	0	0	0	0	1	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0046	6669	1	0	0	0	0	1	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0047	6671	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0048	6671	1	0	0	1	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0049	6671	1	0	0	1	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0050	6671	1	0	0	0	0	1	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0051	6671	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0052	6672	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0053	6668	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	1/0	t0054	6671	1	0	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	t0055	6668	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDC_chr15_50236947_50270726	1/1	t0001	417	382	75	75	164	18	48	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	t0002	417	34	19	1	14	0	0	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	t0003	417	2	0	2	0	0	0	copy fasta	HDC	chr15	50236947	50270726
HDDC2_chr6_125270350_125306967	0/0	t0001	832	197	55	31	91	8	12	copy fasta	HDDC2	chr6	125270350	125306967
HDDC2_chr6_125270350_125306967	1/0	t0002	832	84	2	17	48	3	13	copy fasta	HDDC2	chr6	125270350	125306967
HDDC2_chr6_125270350_125306967	0/1	t0003	831	75	28	16	24	1	5	copy fasta	HDDC2	chr6	125270350	125306967
HDDC2_chr6_125270350_125306967	0/0	t0004	832	9	9	0	0	0	0	copy fasta	HDDC2	chr6	125270350	125306967
HDDC2_chr6_125270350_125306967	0/0	t0005	832	5	0	0	5	0	0	copy fasta	HDDC2	chr6	125270350	125306967
HDDC2_chr6_125270350_125306967	0/0	t0006	831	2	0	0	2	0	0	copy fasta	HDDC2	chr6	125270350	125306967
HDDC2_chr6_125270350_125306967	0/0	t0007	832	1	0	1	0	0	0	copy fasta	HDDC2	chr6	125270350	125306967
HDDC2_chr6_125270350_125306967	0/0	t0008	832	1	0	1	0	0	0	copy fasta	HDDC2	chr6	125270350	125306967
HDDC3_chr15_90924968_90937549	1/1	t0001	1317	216	57	38	85	11	23	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0002	1317	141	22	31	80	1	7	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0003	1317	14	0	3	0	2	9	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0004	1317	8	7	1	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0005	1317	3	0	0	3	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0006	1317	3	2	1	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0007	1317	2	0	0	0	0	2	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	t0008	1317	2	2	0	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549